Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0992 ATGAAACACTCTGAAGTTTGGTTAGAAGATTGTCCTCCTTGGGCTCTCAGCATTATAGCTCAAGATATGCCTCATAGGGACGTTCCAACCCTTTCCTTTATTTCTTTCATCTATTCTGAATCCGGCTGGTCTTACTCGTATACAATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAACCCACGAAGAATAAAAACATCAGAAAACGGACGGTTGATGAAGATGAAGAGGAGGACTCTAAAACTGAGACTTCGTTCCTGGCTAATCAGAAAAAAACTCCCAAGACTAAGAGCAAGATTTATTTCTCTTCTGGACCCTCAAAAAGTTCCTTGTCTAATGAGTCAAATGCGGAGCCTGAAAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCAACTGCAACTCTGGAAACAGAGACTGAGTTCTCAAGAGATGCACGAGCTATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGAAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACACACAATTTCAAGTGAAAAAGCTGGTGGAGCACATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGGGATTACAAATCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTAGAGAAAGCAAGGAAGAGAAAATTAGCTATGGGTTCTGATGATGGGGATGAGGATGCTGCAGAACAGAGTGATGAAGATGATGAAGATGCCCTTCCCTTCGCTTGTTTTATTTGCCGTGAGCCATTTGTGGACCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAACACTGTGCGCTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAACCTACGCTTGGAATCTTTAACACGGCTCATGAGATACGGAAAAAGATGGCACAAAGTAAATAA 1113 42.77 MKHSEVWLEDCPPWALSIIAQDMPHRDVPTLSFISFIYSESGWSYSYTMTDTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKTETSFLANQKKTPKTKSKIYFSSGPSKSSLSNESNAEPEKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMGSDDGDEDAAEQSDEDDEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31874936 31879374 + Maker00008503 Lcy10g0992 644503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0992 370 Pfam Zinc finger, C3HC4 type (RING finger) 310 352 - -
Lcy10g0992 370 MobiDBLite consensus disorder prediction 75 126 - -
Lcy10g0992 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 259 IPR000571 GO:0046872(InterPro)
Lcy10g0992 370 Gene3D - 231 265 - -
Lcy10g0992 370 SUPERFAMILY RING/U-box 310 354 - -
Lcy10g0992 370 ProSitePatterns Zinc finger RING-type signature. 326 335 IPR017907 -
Lcy10g0992 370 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872(InterPro)
Lcy10g0992 370 FunFam RING finger protein 113A 309 368 - -
Lcy10g0992 370 ProSiteProfiles Zinc finger RING-type profile. 311 349 IPR001841 -
Lcy10g0992 370 MobiDBLite consensus disorder prediction 93 126 - -
Lcy10g0992 370 SMART ring_2 311 348 IPR001841 -
Lcy10g0992 370 SMART c3hfinal6 233 260 IPR000571 GO:0046872(InterPro)
Lcy10g0992 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 368 IPR013083 -
Lcy10g0992 370 MobiDBLite consensus disorder prediction 282 301 - -
Lcy10g0992 370 SUPERFAMILY CCCH zinc finger 232 264 IPR036855 GO:0046872(InterPro)
Lcy10g0992 370 CDD RING-HC_RNF113A_B 304 357 - -
Lcy10g0992 370 PANTHER ZINC FINGER PROTEIN 183 60 369 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0992 Lcy-Chr10:31874936 Lcy13g0192 Lcy-Chr13:1993613 1.12E-16 dispersed
Lcy12g0794 Lcy-Chr12:10340189 Lcy10g0992 Lcy-Chr10:31874936 6.31E-110 transposed
Lcy10g0992 Lcy-Chr10:31874936 Lcy10g1489 Lcy-Chr10:39099372 3.02E-234 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18957 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0992 K13127 - csv:101221334 601.282