Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g0992 | ATGAAACACTCTGAAGTTTGGTTAGAAGATTGTCCTCCTTGGGCTCTCAGCATTATAGCTCAAGATATGCCTCATAGGGACGTTCCAACCCTTTCCTTTATTTCTTTCATCTATTCTGAATCCGGCTGGTCTTACTCGTATACAATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAACCCACGAAGAATAAAAACATCAGAAAACGGACGGTTGATGAAGATGAAGAGGAGGACTCTAAAACTGAGACTTCGTTCCTGGCTAATCAGAAAAAAACTCCCAAGACTAAGAGCAAGATTTATTTCTCTTCTGGACCCTCAAAAAGTTCCTTGTCTAATGAGTCAAATGCGGAGCCTGAAAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCAACTGCAACTCTGGAAACAGAGACTGAGTTCTCAAGAGATGCACGAGCTATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGAAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACACACAATTTCAAGTGAAAAAGCTGGTGGAGCACATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGGGATTACAAATCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTAGAGAAAGCAAGGAAGAGAAAATTAGCTATGGGTTCTGATGATGGGGATGAGGATGCTGCAGAACAGAGTGATGAAGATGATGAAGATGCCCTTCCCTTCGCTTGTTTTATTTGCCGTGAGCCATTTGTGGACCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAACACTGTGCGCTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAACCTACGCTTGGAATCTTTAACACGGCTCATGAGATACGGAAAAAGATGGCACAAAGTAAATAA | 1113 | 42.77 | MKHSEVWLEDCPPWALSIIAQDMPHRDVPTLSFISFIYSESGWSYSYTMTDTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKTETSFLANQKKTPKTKSKIYFSSGPSKSSLSNESNAEPEKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMGSDDGDEDAAEQSDEDDEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 31874936 | 31879374 | + | Maker00008503 | Lcy10g0992 | 644503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g0992 | 370 | Pfam | Zinc finger, C3HC4 type (RING finger) | 310 | 352 | - | - | |
Lcy10g0992 | 370 | MobiDBLite | consensus disorder prediction | 75 | 126 | - | - | |
Lcy10g0992 | 370 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 234 | 259 | IPR000571 | GO:0046872(InterPro) | |
Lcy10g0992 | 370 | Gene3D | - | 231 | 265 | - | - | |
Lcy10g0992 | 370 | SUPERFAMILY | RING/U-box | 310 | 354 | - | - | |
Lcy10g0992 | 370 | ProSitePatterns | Zinc finger RING-type signature. | 326 | 335 | IPR017907 | - | |
Lcy10g0992 | 370 | ProSiteProfiles | Zinc finger C3H1-type profile. | 233 | 261 | IPR000571 | GO:0046872(InterPro) | |
Lcy10g0992 | 370 | FunFam | RING finger protein 113A | 309 | 368 | - | - | |
Lcy10g0992 | 370 | ProSiteProfiles | Zinc finger RING-type profile. | 311 | 349 | IPR001841 | - | |
Lcy10g0992 | 370 | MobiDBLite | consensus disorder prediction | 93 | 126 | - | - | |
Lcy10g0992 | 370 | SMART | ring_2 | 311 | 348 | IPR001841 | - | |
Lcy10g0992 | 370 | SMART | c3hfinal6 | 233 | 260 | IPR000571 | GO:0046872(InterPro) | |
Lcy10g0992 | 370 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 368 | IPR013083 | - | |
Lcy10g0992 | 370 | MobiDBLite | consensus disorder prediction | 282 | 301 | - | - | |
Lcy10g0992 | 370 | SUPERFAMILY | CCCH zinc finger | 232 | 264 | IPR036855 | GO:0046872(InterPro) | |
Lcy10g0992 | 370 | CDD | RING-HC_RNF113A_B | 304 | 357 | - | - | |
Lcy10g0992 | 370 | PANTHER | ZINC FINGER PROTEIN 183 | 60 | 369 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0992 | Lcy-Chr10:31874936 | Lcy13g0192 | Lcy-Chr13:1993613 | 1.12E-16 | dispersed | |
Lcy12g0794 | Lcy-Chr12:10340189 | Lcy10g0992 | Lcy-Chr10:31874936 | 6.31E-110 | transposed | |
Lcy10g0992 | Lcy-Chr10:31874936 | Lcy10g1489 | Lcy-Chr10:39099372 | 3.02E-234 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18957 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g0992 | K13127 | - | csv:101221334 | 601.282 |