Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g0995 ATGGATAATGTGATGTGGAAATCCTTCTATATATTTTCTTTGATTGTTCCATCATCCACAACTTTGAAGAAGCTTCAGAGTCCTATGGAGGAGGGAGGTTTGGGCCTTTTTGATATTCACAAAAAGAATATCTCCTTGTTAGCCAAATGGACTTGGAGATTTTACAAAGAAAAGGATGCTCTATGGAGGAGATTGATTTCTATTAAATTCGGAGTTTCAAAAAATAACCTCAAGCCCGGCAGCCGCTCTCTAGGCACATCCAAGGGCCCCTGGAAATCCATCCAAAAGATGCAAGGACTGATCTTCAACAACATTGAGCTAATAGTTGGTAAGGGAGACAAGGCCATGTTTTGGGAAGATGTTTGGATTGGATCAACTAATCTAAAGTCTCGGTTTCCCTCATTGTATAACCTATCTTTAAAAAAAGAGGCTCACATCCAAGATTTTGGGAACCCTCTGTCCGGAGATTGGAATCTTCACCTCAGAAGAAGACTAAATGATGAAGAAACATTAGAATGGGCTATGATGTCTCACCAACTAACATCTTTTTCCTTTAAAGATGAGGAAGATTATTGGGTGTGGAATCTTGAAAAATCTGGGAACTTTTCTTCTAGATCTCTCACAAAAAAGCTGGCTTCTCGAGCAAGCTTCGCAAATTCTGACCTTTACAGTATTTTATGGAAAGGCCCTATGCCAAAGAAGGTCAAATTTTTCATTTGGGAGTTAAGCCATGCTTGTATTAATACATCAGATGTAGTCCAGCGAAAATACCCAGGGCTGTCTCTCTCTCCTAGTTGCTGTAATATGTGTATAAGGAATCATGAGACCCAGATTCATTTCTTCAGTCTTTGTCCTTATGCTGCTGCCTTTTGGGATTACCTTCAACAAGCGTTTGGATGGCACACTCCTAGACCGGGTGACATCCTTTCTCTTCTCAAATTATCTATCATCGGGCATCCTTTCAAAAAAGAGAAGAAATTTCTTTGGCTCAATTTCCTCTATGCTTTTTTGTGGAAGATATGGCTGGAACGAAATGATCGAATCTTCAACGATAAGTCTCAAAGCATTAGCGCCTTCATTGATTCTACTATTTATCTTGCTATCCTTGGTTTACGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATGTGCTCATGATGCTGGTGTCAACTTATTCTTTTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCACGAAGTTTTCGAGTTGGCAAGCCAAGCTGCACCGGCTGTGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATAATCTGATGGATGGGATCAACCGAGGTGGTGGCCCACTTGTACTTGCTTCTACCAACAGGCCTGAAAGCATTGAGCCTGCACTAAGGCGGCCTGGAAGACTTGACCGGGAAATTGAAATAGGTGTACCATCTCCCAATCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGACCTGCAAGTTCAACATCTATCCATGGTTACTCATGGTTTTGTGGGAGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCTTTAGTTTGTATGAGGCGTTATCACAAGTTTAAAATTTCTACCGATTGCTTTAGTTCTAGTAGATCCGTTATAACTGAGGAACAACAGAAGCTCACCAAGGTGGAACACAAAACCAATGTTGATGATATGATTTTAGAACCTGTTCTCTCAAAAGATGCGAGAAATATATCAGGGTGTAGATTGAATGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTAAGATTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGACGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGCTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAAGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCGGTTAGATCTCTATTTGCTAAGGCAAGAGCCAATGCCCCATCCATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCAGCTACCAATAGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGTTGCTATATGTTGGGCCTCCAAATGAATCTGAACGAGAAGAGATATTTCATATCCATTTGTGTAAAGTTCCTTGTAGCTCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGCTGTACTGGGGCTGACATATCATTAATATGCAGAGAAGCTGCTTTATTTGCTCTTGAGGTTTTCTACTTGGCCTCGGAAGTGGTCATCGTCGCACGTGGAGGGTACTGTCGGTGCGATTCTGCTTGTGGATTTGATGGGTTTTGCGTAAGCTTGCTGGAAGCTCATGGGTTCTCACGAATGGAAGCCAGACGGAGGAGAAAGAGGGCGCCACCACCACTGTTAGCCTTGCTGGAGATGTATGGTGGCCGGGGGAGAAGGAAAGGGGGTGGTGGTGGTGTGCGGCTATTAACGCTAGGGAGAGGGAGAGAAGAAAAAGCTTCTGGTTCTGGTACAAGTTGGTCGTCCGATAATGATGGAACAGAAAAAAGCCATAGTGGCAGCCTTGCTACGTCAAGTGACACCATTGGTGGGGAATTTGTTCTAGTGCCTTTGCAACAAGAGAGGAAACCTATAAGTCCTTTGTCCCCTTGGATTACTGATTTATTGCTTACTGCTCCATTGGGCATCTGA 3027 43.01 MDNVMWKSFYIFSLIVPSSTTLKKLQSPMEEGGLGLFDIHKKNISLLAKWTWRFYKEKDALWRRLISIKFGVSKNNLKPGSRSLGTSKGPWKSIQKMQGLIFNNIELIVGKGDKAMFWEDVWIGSTNLKSRFPSLYNLSLKKEAHIQDFGNPLSGDWNLHLRRRLNDEETLEWAMMSHQLTSFSFKDEEDYWVWNLEKSGNFSSRSLTKKLASRASFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDVVQRKYPGLSLSPSCCNMCIRNHETQIHFFSLCPYAAAFWDYLQQAFGWHTPRPGDILSLLKLSIIGHPFKKEKKFLWLNFLYAFLWKIWLERNDRIFNDKSQSISAFIDSTIYLAILGLRTTKGVLLHGPPGTGKTSLAQLCAHDAGVNLFFLNGPEIISQYHGESEQALHEVFELASQAAPAVQEKMEVKSCLKELLLHNLMDGINRGGGPLVLASTNRPESIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSDLQVQHLSMVTHGFVGADLAALCNEAALVCMRRYHKFKISTDCFSSSRSVITEEQQKLTKVEHKTNVDDMILEPVLSKDARNISGCRLNVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFHIHLCKVPCSSDVSTRKLASLTQGCTGADISLICREAALFALEVFYLASEVVIVARGGYCRCDSACGFDGFCVSLLEAHGFSRMEARRRRKRAPPPLLALLEMYGGRGRRKGGGGGVRLLTLGRGREEKASGSGTSWSSDNDGTEKSHSGSLATSSDTIGGEFVLVPLQQERKPISPLSPWITDLLLTAPLGI 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31903416 31916383 + Maker00008695 Lcy10g0995 644506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g0995 1008 Pfam zinc-binding in reverse transcriptase 202 291 IPR026960 -
Lcy10g0995 1008 Pfam AAA+ lid domain 518 561 IPR041569 -
Lcy10g0995 1008 Pfam AAA+ lid domain 827 857 IPR041569 -
Lcy10g0995 1008 Pfam ATPase family associated with various cellular activities (AAA) 673 804 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g0995 1008 Pfam ATPase family associated with various cellular activities (AAA) 377 493 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g0995 1008 SMART AAA_5 669 807 IPR003593 GO:0016887(InterPro)
Lcy10g0995 1008 SMART AAA_5 373 496 IPR003593 GO:0016887(InterPro)
Lcy10g0995 1008 CDD RecA-like_CDC48_r2-like 644 803 - -
Lcy10g0995 1008 Gene3D - 344 495 IPR027417 -
Lcy10g0995 1008 PANTHER AAA-FAMILY ATPASE 369 436 IPR050168 GO:0016887(PANTHER)
Lcy10g0995 1008 MobiDBLite consensus disorder prediction 946 970 - -
Lcy10g0995 1008 Gene3D - 634 805 IPR027417 -
Lcy10g0995 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 857 IPR027417 -
Lcy10g0995 1008 ProSitePatterns AAA-protein family signature. 775 793 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g0995 1008 Gene3D - 496 633 - -
Lcy10g0995 1008 MobiDBLite consensus disorder prediction 940 970 - -
Lcy10g0995 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 560 IPR027417 -
Lcy10g0995 1008 Gene3D - 806 858 - -
Lcy10g0995 1008 FunFam calmodulin-interacting protein 111 isoform X1 630 805 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0995 Lcy-Chr10:31903416 Lcy10g1488 Lcy-Chr10:39074011 7.42E-274 dispersed
Lcy6g0614 Lcy-Chr6:5849260 Lcy10g0995 Lcy-Chr10:31903416 8.08E-40 dispersed
Lcy7g2054 Lcy-Chr7:48492059 Lcy10g0995 Lcy-Chr10:31903416 2.10E-38 dispersed
Lcy9g1123 Lcy-Chr9:35152902 Lcy10g0995 Lcy-Chr10:31903416 8.42E-18 dispersed
Lcy9g2307 Lcy-Chr9:47469957 Lcy10g0995 Lcy-Chr10:31903416 9.90E-44 dispersed
Lcy1g1142 Lcy-Chr1:10662351 Lcy10g0995 Lcy-Chr10:31903416 8.94E-47 transposed
Lcy3g1229 Lcy-Chr3:37830491 Lcy10g0995 Lcy-Chr10:31903416 0.00E+00 transposed
Lcy7g0826 Lcy-Chr7:8147507 Lcy10g0995 Lcy-Chr10:31903416 1.22E-83 transposed
Lcy9g0830 Lcy-Chr9:27607766 Lcy10g0995 Lcy-Chr10:31903416 1.36E-18 transposed
Lcy1g1811 Lcy-Chr1:19670181 Lcy10g0995 Lcy-Chr10:31903416 1.52E-123 wgd
Lcy10g0995 Lcy-Chr10:31903416 Lcy2g1563 Lcy-Chr2:21165295 1.82E-129 wgd
Lcy10g0995 Lcy-Chr10:31903416 Lcy2g1418 Lcy-Chr2:17255506 9.78E-61 wgd
Lcy10g0995 Lcy-Chr10:31903416 Lcy4g1465 Lcy-Chr4:36744521 2.93E-50 wgd
Lcy10g0995 Lcy-Chr10:31903416 Lcy5g1077 Lcy-Chr5:21661229 2.62E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g0995 - - - 0.0