Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1012 ATGGGCAAGAAGAAGGGCTGGTTCTATTTGGTCAAGAAGCTATTTGTTCCAGAGACAGAGCCAAAGCCTGAGAAGCACCTGAGACGAGAGGAGGAAGAGGAGAGGAAACAGGCTCTTTCTGTGGCCATTGCAAGTACCGCAGCCGCCGAAGCGGCGGTTGCAGCAGCCAAGGCTGCTGTTGAGGTTGTGTGGCTCACAGGGACCGCTCAATCTAATCAACAAGAGGCTGCAGATGAAGCCTTTAAACCTCACAAGAAGGCCCCTCCATCTGATCTCTATAAACGTGAAAGGGAAATCCATGACTTTGCTGCCATTATTATCCAAACTGCTTTCCGTGGCTTCCTTGCGAGGAAAGCATTGAGAGCACTGAAAGGAATAGTGAGACTACAGGCAATCATCAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATCGACTCCATCCTCCTCAAAACACTTTCAATTCTCCTGAAACCAAGCAGTTGCAGAGCTTGAAAGATAAGATTATAAAGTTGGATTCGAACGGTCAAAGGTGGGATGATAGCCTGCTATCAAAAGAAGAAGCCGATGCAGTGTTTTTGAGCAGGAAAGAGGCAGTGATCAGGAGAGAACGAGTCAAGGAATACTTATTCGCCCACAGGAGATCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTTGACCAATGGGTCGATACCCAACTCTCCAAAAGCAAAGAACTCGAAGATTTAGACTCCATTTTCACCTCAAATCCAAAACACAAAGAGACAGAAGGGTTCAAACCAGCCCCAACAACAAAAAACATGGACAGAGCCATAGAACTCCCCAACCAATCTCCATCTCAAAAACCAGCACTGAAAAAGCTCTCTCACCACCAGAAGCAGCGTTCATTGGGGGGCGGCATGGACTCACACAGCTCATTTTCAAGCTCCCCACTGGTGCCAACATACATGGCAGCCACAGAATCAGCAAAGGCAAAAGCAAGGTCCTTGAGCTCGCCAAAGCTGAGGCCAGCAGGGGGATTGGACACATGCTCGGATGGGAATTCGCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCATCAATGGCGAGTGAAGTGGCAATTAGCAGTGGCAGAAAGGGTTTTCAGCAGCAGAGGTCACCGGGGCTGAAGGGGCTGCCAGGGCCTACAAGATCAAGCAGAACTCTCACAAAGGATTTGAGTATTGATTCTGAGCATTCGTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1326 48.49 MGKKKGWFYLVKKLFVPETEPKPEKHLRREEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTAQSNQQEAADEAFKPHKKAPPSDLYKREREIHDFAAIIIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHPPQNTFNSPETKQLQSLKDKIIKLDSNGQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPKHKETEGFKPAPTTKNMDRAIELPNQSPSQKPALKKLSHHQKQRSLGGGMDSHSSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMASEVAISSGRKGFQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32168657 32172591 + Maker00008572 Lcy10g1012 644523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1012 441 MobiDBLite consensus disorder prediction 297 332 - -
Lcy10g1012 441 PANTHER IQ-DOMAIN 5-RELATED 25 376 - -
Lcy10g1012 441 Pfam IQ calmodulin-binding motif 103 121 IPR000048 GO:0005515(InterPro)
Lcy10g1012 441 Pfam Protein of unknown function (DUF4005) 322 402 IPR025064 -
Lcy10g1012 441 ProSiteProfiles IQ motif profile. 100 128 - -
Lcy10g1012 441 ProSiteProfiles IQ motif profile. 124 151 - -
Lcy10g1012 441 MobiDBLite consensus disorder prediction 347 376 - -
Lcy10g1012 441 MobiDBLite consensus disorder prediction 390 441 - -
Lcy10g1012 441 MobiDBLite consensus disorder prediction 413 441 - -
Lcy10g1012 441 Gene3D - 100 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1012 Lcy-Chr10:32168657 Lcy1g1390 Lcy-Chr1:13454724 1.04E-26 dispersed
Lcy10g1012 Lcy-Chr10:32168657 Lcy10g1784 Lcy-Chr10:42199382 1.10E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1012 - - - 0.0