Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1012 ATGGGCAAGAAGAAGGGCTGGTTCTATTTGGTCAAGAAGCTATTTGTTCCAGAGACAGAGCCAAAGCCTGAGAAGCACCTGAGACGAGAGGAGGAAGAGGAGAGGAAACAGGCTCTTTCTGTGGCCATTGCAAGTACCGCAGCCGCCGAAGCGGCGGTTGCAGCAGCCAAGGCTGCTGTTGAGGTTGTGTGGCTCACAGGGACCGCTCAATCTAATCAACAAGAGGCTGCAGATGAAGCCTTTAAACCTCACAAGAAGGCCCCTCCATCTGATCTCTATAAACGTGAAAGGGAAATCCATGACTTTGCTGCCATTATTATCCAAACTGCTTTCCGTGGCTTCCTTGCGAGGAAAGCATTGAGAGCACTGAAAGGAATAGTGAGACTACAGGCAATCATCAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATCGACTCCATCCTCCTCAAAACACTTTCAATTCTCCTGAAACCAAGCAGTTGCAGAGCTTGAAAGATAAGATTATAAAGTTGGATTCGAACGGTCAAAGGTGGGATGATAGCCTGCTATCAAAAGAAGAAGCCGATGCAGTGTTTTTGAGCAGGAAAGAGGCAGTGATCAGGAGAGAACGAGTCAAGGAATACTTATTCGCCCACAGGAGATCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTTGACCAATGGGTCGATACCCAACTCTCCAAAAGCAAAGAACTCGAAGATTTAGACTCCATTTTCACCTCAAATCCAAAACACAAAGAGACAGAAGGGTTCAAACCAGCCCCAACAACAAAAAACATGGACAGAGCCATAGAACTCCCCAACCAATCTCCATCTCAAAAACCAGCACTGAAAAAGCTCTCTCACCACCAGAAGCAGCGTTCATTGGGGGGCGGCATGGACTCACACAGCTCATTTTCAAGCTCCCCACTGGTGCCAACATACATGGCAGCCACAGAATCAGCAAAGGCAAAAGCAAGGTCCTTGAGCTCGCCAAAGCTGAGGCCAGCAGGGGGATTGGACACATGCTCGGATGGGAATTCGCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCATCAATGGCGAGTGAAGTGGCAATTAGCAGTGGCAGAAAGGGTTTTCAGCAGCAGAGGTCACCGGGGCTGAAGGGGCTGCCAGGGCCTACAAGATCAAGCAGAACTCTCACAAAGGATTTGAGTATTGATTCTGAGCATTCGTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1326 48.49 MGKKKGWFYLVKKLFVPETEPKPEKHLRREEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTAQSNQQEAADEAFKPHKKAPPSDLYKREREIHDFAAIIIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHPPQNTFNSPETKQLQSLKDKIIKLDSNGQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPKHKETEGFKPAPTTKNMDRAIELPNQSPSQKPALKKLSHHQKQRSLGGGMDSHSSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMASEVAISSGRKGFQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32168657 32172591 + Maker00008572 Lcy10g1012 644523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1012 441 MobiDBLite consensus disorder prediction 297 332 - -
Lcy10g1012 441 PANTHER IQ-DOMAIN 5-RELATED 25 376 - -
Lcy10g1012 441 Pfam IQ calmodulin-binding motif 103 121 IPR000048 GO:0005515(InterPro)
Lcy10g1012 441 Pfam Protein of unknown function (DUF4005) 322 402 IPR025064 -
Lcy10g1012 441 ProSiteProfiles IQ motif profile. 100 128 - -
Lcy10g1012 441 ProSiteProfiles IQ motif profile. 124 151 - -
Lcy10g1012 441 MobiDBLite consensus disorder prediction 347 376 - -
Lcy10g1012 441 MobiDBLite consensus disorder prediction 390 441 - -
Lcy10g1012 441 MobiDBLite consensus disorder prediction 413 441 - -
Lcy10g1012 441 Gene3D - 100 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1012 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1012 Lcy-Chr10:32168657 Lcy1g1390 Lcy-Chr1:13454724 1.04E-26 dispersed
Lcy10g1012 Lcy-Chr10:32168657 Lcy10g1784 Lcy-Chr10:42199382 1.10E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35