Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1026 ATGGGTTCGAATTTAGTGCCCCAAAAACCCACCGAAGTCCAATTTCAACCCGAAATAGGAAAAGAAGAAAAGGGCAGAGAAGAAGAAGAGAGAACTGAAGAACTTCTCACCTTCGACTTCCAGTTCCAGAACGAAGCCCAGATTCCATTGCAGCAGCTTGCACCGGAGCTTCCTTCCAATCTCTTCATCTCTGTAGCCGGCGGCAACCCTCTTCTTCCCCATTTCATTCTTCCATATTCGCTGATTATGCCAGACGTGCAAGCCCTTGTGAATGATTTCGTTATCAAGCTCAAGAAGCGTAAAATTGAGGGCTCCTTGGCCACCGCGAAGCATACGGCTGAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACGAATCAGGCGGCTGCTTTGATTGATGCTGTGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGAGCTTGCTGTGGGTAATATTGCGAGGCGTGTTTTGCACATTATTAGAGAGGAGGATCTTTCTCTCACCACAGCTTCTATAGCTGGGTTGAGCTTAGCAGCAGTTAGTGATGATGAAGATGACAGTGAAAAAGATGATCGCCCGGCCCTCTCAGCTGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGGCCGCCTTCCTTGCAAACTCTTCTTGAGGACGTTCCTAACCAAGCATCTGTTCATCAAACTTCATCATCTGGAGGTGATTCAGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCGAGGAGTCGGAAACTCAAGCATGATGTAATTGAAGCTGTTAATGAACTTATTCAGGATATTGCAACTTGTCATGAACAAATTGCTGAGCAAGCAGTGGAACACATCCATCAAAAAACAGTATTGGAATTTCTTTGTGCTGCCAAGGAGAAGAAAAGGTCCTTCCGTGTGTTTGTTGCTGAAGGTGCTCCAAGATACCAGGGTCATCTTCTTGCTAAGGAGTTAGTTACAAGAGGTTTACAGACCACACTTATTACTGATTCTGCAGTTTTTGCCATGATCTCCCGGGTGAATATGGTAATAGTTGGTGCTCATGCTGTCATGGCAAATGGTGGTGTCATGGCACCTGTCGGATTGAATATGGTGGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTACTAGCTGGAAGTCACAAGTTGTGCCCTTTGTATCCTCACAATCCTGAAGTTCTACTCAATGAACTGAGATCCCCGTCAGAGCTACTGGACTTCGGTGAATTTTCAGATTGCATGGACTTTGGAACTAACACTGGTTCTCCTCTTCTCCATGTAGTCAACCCTACGTTTGACTATGTGCCACCATCACTTGTTAGTTTATTTATTACTGATACAGGTGGCCATAACTCATCATACATGTATCGGCTTATTGCTGATTATTATTCAGCTGATGATTTGGTAATCAAACGAAGACCTTCTACAGGGAGCTGA 1470 45.31 MGSNLVPQKPTEVQFQPEIGKEEKGREEEERTEELLTFDFQFQNEAQIPLQQLAPELPSNLFISVAGGNPLLPHFILPYSLIMPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKAVGEQLIAANPVELAVGNIARRVLHIIREEDLSLTTASIAGLSLAAVSDDEDDSEKDDRPALSAAAVAAAARSTLRPPSLQTLLEDVPNQASVHQTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQKTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVTRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGTNTGSPLLHVVNPTFDYVPPSLVSLFITDTGGHNSSYMYRLIADYYSADDLVIKRRPSTGS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32383273 32391899 + Maker00008757 Lcy10g1026 644537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1026 489 MobiDBLite consensus disorder prediction 225 243 - -
Lcy10g1026 489 Gene3D - 274 473 IPR042529 -
Lcy10g1026 489 MobiDBLite consensus disorder prediction 244 258 - -
Lcy10g1026 489 MobiDBLite consensus disorder prediction 225 258 - -
Lcy10g1026 489 SUPERFAMILY NagB/RpiA/CoA transferase-like 71 478 IPR037171 -
Lcy10g1026 489 FunFam translation initiation factor eIF-2B subunit beta 276 474 - -
Lcy10g1026 489 MobiDBLite consensus disorder prediction 16 30 - -
Lcy10g1026 489 MobiDBLite consensus disorder prediction 1 30 - -
Lcy10g1026 489 Pfam Initiation factor 2 subunit family 101 461 IPR000649 GO:0044237(InterPro)
Lcy10g1026 489 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 85 480 IPR051855 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1026 Lcy-Chr10:32383273 Lcy2g2169 Lcy-Chr2:44303467 7.46E-67 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1026 K03754 - csv:101220366 704.516