Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1027 ATGGCATCTGGAAGTCCTTATTTTGATGATATGCGGAGCAAACCAGAGGTCATTGATCCTCCCCAAAATGAAGATATGATGGACATCAGGGAAACTGTGGATGATCCAGCTCAAAATGAACTTAAACCTAATGTTACTGTTTCCAGCAGCGTTCGTGAGCTTTTGGAATGCCCGGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGGATTTTGGTGTTGATGTAGTTGTTAGAGATTCTATGTCTGTGAAGTGTTCAAATGGTCACACACTGTGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGTCCTACGTGTAGGCACGAACTTGGCAATATCAGATGTCTGGCGTTGGAGAAGGTGGCCGCATCTCTAGAACTTCCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCGTATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATATGCTGGATCAGAATGTTCAGTCGTTGGTGATATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTATGTAAAATCAAACCCTCAAGAAGTTGAAAATGCAACATGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATACTTTTGCTTGCATTTCGAAGCTTTCCAGCTCGGAATGGCTCCAGTCTACATAGCTTTTTTGCGGTTCATGGGTGATGATAATGATGCAAAAAACTACAGCTATAGTCTCGAGGTGGGCGGAAATGGGAGGAAGATGGTATGGCAAGGGGTACCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGTTTTGATGGGCTCATTATCCAACGCAATATGGCGCTCTTCTTCTCCGGTGGCGACCGGAAGGAACTAAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGTGA 963 44.34 MASGSPYFDDMRSKPEVIDPPQNEDMMDIRETVDDPAQNELKPNVTVSSSVRELLECPVCLNAMYPPIHQDFGVDVVVRDSMSVKCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32393723 32396533 + Maker00008796 Lcy10g1027 644538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1027 320 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270(InterPro)
Lcy10g1027 320 FunFam E3 ubiquitin-protein ligase SINAT3 122 180 - -
Lcy10g1027 320 ProSiteProfiles Zinc finger RING-type profile. 57 108 IPR001841 -
Lcy10g1027 320 SUPERFAMILY TRAF domain-like 125 317 - -
Lcy10g1027 320 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 315 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lcy10g1027 320 CDD RING-HC_SIAHs 55 108 - -
Lcy10g1027 320 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 181 313 IPR008974 GO:0005515(InterPro)
Lcy10g1027 320 CDD Sina 186 314 - -
Lcy10g1027 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 180 IPR013083 -
Lcy10g1027 320 FunFam E3 ubiquitin-protein ligase SINAT5-like 181 313 - -
Lcy10g1027 320 Pfam Sina, zinc finger 121 196 - -
Lcy10g1027 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 124 IPR013083 -
Lcy10g1027 320 Pfam Sina, TRAF-like domain 216 313 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lcy10g1027 320 MobiDBLite consensus disorder prediction 1 23 - -
Lcy10g1027 320 SUPERFAMILY RING/U-box 56 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1027 Lcy-Chr10:32393723 Lcy7g0691 Lcy-Chr7:6398544 8.22E-206 dispersed
Lcy10g1027 Lcy-Chr10:32393723 Lcy1g2128 Lcy-Chr1:29369174 7.57E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1027 K04506 - csv:101220834 628.632