Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1030 ATGCAATCGTTAGCGCCGCGCCTCTCCTTTTTAATTTCTCGAACGATTGCCCCATTCTTTCATGATTTGTGTGCACGTTATTTGAGGCTGGAGATGACTACCCAGCAGCAGAATTCTGATTCAAATGCCGTTTCAGGCGCTTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAACGCAAAACTGGAACTGGAAAAAGGATCAACAGCTCTCTGGCCCTCAGAAAAGATTGGAAGATCTGTTGCATCAGTCTGGTAATAAGTATTGTGCAGATTGTGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTCTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACAAGTCAATACTTTGATAAGCATGGGCGGAAACATAAATGTAAACAAGAAGTATGAAGCCGGCATCATAGATATGAATAGAAAACCAAGACCAGATTCCTGCATAGAGGAGCGCTTTGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAATAATCATAATTCTTGTGATAACAACTCATTTAGTAAAAGGATTTCATCATGCTCTCAAAGTAACTCTTCAAGCAAGAACGGTAACCAGGACAAAAGGCACTATGACAAACAAGCTACTAGGCATCGCATTGGGCATGCATTTCGCAATAGCCGGGGAAGAAGAGATAGTGAACACAAGTGTTTTGACAAGGGCTTTCCTTCGGTCGCAAGACAAACATCGGCAGGTATGGTTGAATTTGTTGGGTTGGTTAAGGTCAATGTGGTTAGAGGCATGAATCTAGCTGTCCGAGACGTGGTGACCAGCGATCCCTATGTAATTCTCATGTTGGGTCACCAATCGGTGAGGACTCGCGTCATAAAGAACAACCTTAACCCAGTTTGGAACGAGAGCCTAATGTTGTCGATTCCCGAGCACATCCCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCTACTGATGACTTTATGGGTGAGGCCGAAATCGACATTCAACCATTGGTCGCTGCCACCAAGGCCTATGAGAAGTCGACAATTGATGAATCGATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACATTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAAATTGAGCTAGAATGCATTCCTCTCACACAGTAG 1332 42.72 MQSLAPRLSFLISRTIAPFFHDLCARYLRLEMTTQQQNSDSNAVSGACLFDLLFPDSEMQGWDWSRMPSDSETQNWNWKKDQQLSGPQKRLEDLLHQSGNKYCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLISMGGNINVNKKYEAGIIDMNRKPRPDSCIEERFDFIRRKYELLQFYNANNHNSCDNNSFSKRISSCSQSNSSSKNGNQDKRHYDKQATRHRIGHAFRNSRGRRDSEHKCFDKGFPSVARQTSAGMVEFVGLVKVNVVRGMNLAVRDVVTSDPYVILMLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32422889 32433472 + Maker00008841 Lcy10g1030 644541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1030 443 MobiDBLite consensus disorder prediction 222 264 - -
Lcy10g1030 443 PRINTS HIV Rev interacting protein signature 100 119 IPR001164 GO:0005096(InterPro)
Lcy10g1030 443 PRINTS HIV Rev interacting protein signature 140 161 IPR001164 GO:0005096(InterPro)
Lcy10g1030 443 PRINTS HIV Rev interacting protein signature 119 136 IPR001164 GO:0005096(InterPro)
Lcy10g1030 443 Pfam C2 domain 288 376 IPR000008 -
Lcy10g1030 443 CDD ArfGap 91 197 - -
Lcy10g1030 443 Gene3D Arf GTPase activating protein 69 211 IPR038508 -
Lcy10g1030 443 Gene3D C2 domain 286 440 IPR035892 -
Lcy10g1030 443 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 285 443 - -
Lcy10g1030 443 CDD C2_ArfGAP 286 430 - -
Lcy10g1030 443 FunFam stromal membrane-associated protein 1 isoform X1 72 208 - -
Lcy10g1030 443 SUPERFAMILY ArfGap/RecO-like zinc finger 88 204 IPR037278 -
Lcy10g1030 443 SMART arf_gap_3 88 211 IPR001164 GO:0005096(InterPro)
Lcy10g1030 443 ProSiteProfiles C2 domain profile. 268 385 IPR000008 -
Lcy10g1030 443 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 77 443 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Lcy10g1030 443 MobiDBLite consensus disorder prediction 234 248 - -
Lcy10g1030 443 SMART C2_3c 288 383 IPR000008 -
Lcy10g1030 443 Pfam Putative GTPase activating protein for Arf 89 204 IPR001164 GO:0005096(InterPro)
Lcy10g1030 443 ProSiteProfiles ARF GTPase-activating proteins domain profile. 88 210 IPR001164 GO:0005096(InterPro)
Lcy10g1030 443 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 284 378 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1030 Lcy-Chr10:32422889 Lcy7g0692 Lcy-Chr7:6404255 5.47E-177 dispersed
Lcy10g1030 Lcy-Chr10:32422889 Lcy1g0121 Lcy-Chr1:1033618 4.54E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1030 K12486 - csv:101215531 730.324