Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1044 ATGTCTTCTTCTCTTTCATGGTTCTTGTTCTTTTCCCTCTCGTTTACTTTTTCCTGTACGGGCGGCTCGGTTTCCGATGATGCAATGTCGCTCCTCAGGTTTAAGGGCTCGATTTCGCTCGACGGCTCTGATCTTCTTCGTGACTGGAATTTTTCGGTTTCTCACTGTAATTGGTTTGGAGTTACTTGCGATGGTGTTACTGGTAGAGTTGTTGCGCTGAACATCAGTGGAAGTGGTGGTATTATGGCGGCGGGTTCTATTCTGGCCGGGACGTTGAATCCGGCGATTGGAAATCTTTCTGAGCTTCGCGTTTTTTCGCTTCCGAATAATCTGATCTACGGGGAGATTCCGGGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTACTTGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCGAAACAGATAAGTTTACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATACCGAGTAAATTGATCGGTTCGACGAAACTAGAAGCAATTGATTTGTCGTACAATCAACTATCTGGTAGGATTCAAGTTGTTGATAATAGATGTGGTGTTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTGATAACATTCCGGCGGAGATTGGAAAATGTTGGAAACTGAAGACTCTGTTGCTCGATAGTAACATATTAGAGGGTCAAATTCCGGCTGAGATTGGCCAAATTTCAGAGCTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACCGATTCGATTCCAAAAGAGCTCAGTAATTGCCGGAAGTTGTCACAGATCGTGTTGACGAATTTGAATGATATCAATCACGACGGCGATAGTTTAAGGGGGGAATTCAACGCTTTCAATGGAGGTATCCCTTCTGATTTGTTATTGCTTCCAAGTCTGCAAGTTTTTTGGGCGCCGAGAGGAAATTTTAATGGCAAATTGCCGAATAATTGGGGTTCTTCATGCTCGCTTAGAGTTCTAAATTTAGGGCAAAATTACATCACTGGTACCATACCCGAATCGATTGGGAAATGTGCGAACCTAACTTACCTGGATTTGTCTTCAAACAAGCTACAAGGTAACCTCCCTATGCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTCCTTTCGAGATTTGAGAAAGACAGTTTCTGTAGGAACAAGATCCCACATGAACCAGTTCCTAATTTCTTAGATGAGGAAGATGATTGGAATTCTTTCTTCAATTTTCCTGTTTGGGATTTCCTAAGATTGAATGATAATCTCATAATCGCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCATTCAAAGTGGGAGAAGAGCTTTTGGCTAATGGCCACAAGTTCTCGTACAAATTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATTGATCTGGTCTCGAACTGTAACGATATGAAGAGCGTTTCAGTTAACTTGAGTTCAAACTCAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAGATGATGGAGTTTGAGGCAGCAAGCAATGAATTAGATAACTCGATTGGACCTGGAATTGGTGACTTGCAGATGCTTCTTCGTCTTGACTTGAGAGAGAATAGATTGTCTGGAGTTTTACCATATCAGTTGGGGAAGTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTCACTGGAGAGATTCCATCTCGACTCAGTCAATTGACTTCCCTCACGAGTTTAGATCTTTCTCGAAACGAATTTACAGGAGTTATCCCTGAAAGCTTGTCATATGCTTCAAGACTTGAGATTTTGTTGCTTGATCATAACAGGTTAACTGGGGAAATACCAGCATCTTTCTCCGCCCTTTCTCATCTCATTAAGTTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACATGATTGACTGCATTTACTTTAGTGGGAATAAGTTTCTGCATCCATGCCCGGATTCATACTCCGAGTCTCCAGCTGGACTTCCGGTTCCTCTCGACGTTGAGAAGTGGAAGAGACGAAGAAAGTTCATGTCCATGATAATCGCTGTGGCTGCTTCCTCAACTCTAATTTGCATACTCCTAATGATAGCTGTTATCATCATTGTCAAGAAAAAGCTTGGTAGACAAAATAGTTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCATCCGATCTGAATTATGATAATGTGGTCCGAGCTACCGAAAATTTTAGCCTTCGCTACCTAATCGGTAGTGGTGGCTTTGGGTCAACATACAAGGCTGAACTGCCCTCAGGTTTCCTGGTTGCTGTAAAAAGACTGTCCATTGGTAGGTTTCAAGGAGGCATCCAACAATTCGATGCAGAAATTCGAACATTGGGAAGAATACGACACAAAAACCTTGTAACTCTTCTTGGGTACTATGTCGGTGAGGCTGAAATGTTCTTAGTTTACAACTACCTTTCTGGTGGGAACCTTGAGACCTTCATTCATGAAAAATCTTGCAAACACGTAAAGCACTCGGTGATCCACAAGATCGCTTGGGACATAGCGAGGGCTCTTGCATACCTTCACTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCCTGCTTGATGAAGAGCATAACATTTACATATCAGATTTTGGGTTGGCCAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATATGCTACCACTTGCAGGGTCTCAGACAAGGCCGATGTTTATAGCTTCGGAGTTGTGCTCTTAGAGTTGCTTTCGGGAAAAAGGTCACTTGATCGATCCTTTTCTGACTTTGGTAATGGGTTTAACATTGTTACATGGGCAAAGATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCAAAGGAACACTTACTTGGAATGTTAAAGCTCGCATCTAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCAATGAAGCAGGTCGTCGAGACACTGAAACAGTTGTAA 3132 42.5 MSSSLSWFLFFSLSFTFSCTGGSVSDDAMSLLRFKGSISLDGSDLLRDWNFSVSHCNWFGVTCDGVTGRVVALNISGSGGIMAAGSILAGTLNPAIGNLSELRVFSLPNNLIYGEIPGSVGKLQSLEVLELQGNNFSGEIPKQISLLRSLRLLNLSDNSFSGSIPSKLIGSTKLEAIDLSYNQLSGRIQVVDNRCGVLNHLRLSHNFLTDNIPAEIGKCWKLKTLLLDSNILEGQIPAEIGQISELRILDVSRNSLTDSIPKELSNCRKLSQIVLTNLNDINHDGDSLRGEFNAFNGGIPSDLLLLPSLQVFWAPRGNFNGKLPNNWGSSCSLRVLNLGQNYITGTIPESIGKCANLTYLDLSSNKLQGNLPMQLRVSCMAYFNVSQNKISGVLSRFEKDSFCRNKIPHEPVPNFLDEEDDWNSFFNFPVWDFLRLNDNLIIAHDFSWNRFSGSLTSFKVGEELLANGHKFSYKLLLNSNQFNGSLPIDLVSNCNDMKSVSVNLSSNSVSGEISDAFFLHCRQMMEFEAASNELDNSIGPGIGDLQMLLRLDLRENRLSGVLPYQLGKLQSLKWMLLGGNNFTGEIPSRLSQLTSLTSLDLSRNEFTGVIPESLSYASRLEILLLDHNRLTGEIPASFSALSHLIKLDVSFNNLSGHIPHLQHMIDCIYFSGNKFLHPCPDSYSESPAGLPVPLDVEKWKRRRKFMSMIIAVAASSTLICILLMIAVIIIVKKKLGRQNSLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGSGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIAWDIARALAYLHYSCDPRIVHRDIKPSNILLDEEHNIYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWAKMLIKEGRSSELFTPELWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32558569 32561700 - Maker00008442 Lcy10g1044 644555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1044 1043 PRINTS Leucine-rich repeat signature 593 606 - -
Lcy10g1044 1043 PRINTS Leucine-rich repeat signature 357 370 - -
Lcy10g1044 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 442 686 - -
Lcy10g1044 1043 SUPERFAMILY L domain-like 201 679 - -
Lcy10g1044 1043 SUPERFAMILY L domain-like 25 280 - -
Lcy10g1044 1043 FunFam Leucine-rich repeat receptor-like protein kinase 24 190 - -
Lcy10g1044 1043 Pfam Leucine rich repeat 332 367 IPR001611 GO:0005515(InterPro)
Lcy10g1044 1043 Pfam Leucine rich repeat 571 630 IPR001611 GO:0005515(InterPro)
Lcy10g1044 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 732 844 - -
Lcy10g1044 1043 Gene3D Phosphorylase Kinase; domain 1 729 844 - -
Lcy10g1044 1043 SUPERFAMILY Protein kinase-like (PK-like) 745 1040 IPR011009 -
Lcy10g1044 1043 CDD STKc_IRAK 774 1043 - -
Lcy10g1044 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1044 1043 Pfam Leucine Rich Repeat 125 145 IPR001611 GO:0005515(InterPro)
Lcy10g1044 1043 Pfam Leucine Rich Repeat 149 167 IPR001611 GO:0005515(InterPro)
Lcy10g1044 1043 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Lcy10g1044 1043 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Lcy10g1044 1043 Pfam Protein kinase domain 773 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1044 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1044 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 283 - -
Lcy10g1044 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Lcy10g1044 1043 Gene3D Ribonuclease Inhibitor 26 193 IPR032675 -
Lcy10g1044 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 845 1043 - -
Lcy10g1044 1043 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Lcy10g1044 1043 Gene3D Ribonuclease Inhibitor 414 692 IPR032675 -
Lcy10g1044 1043 Gene3D Ribonuclease Inhibitor 287 412 IPR032675 -
Lcy10g1044 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524(InterPro)
Lcy10g1044 1043 Gene3D Ribonuclease Inhibitor 194 286 IPR032675 -
Lcy10g1044 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 290 1042 IPR050647 -
Lcy10g1044 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1044 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 286 371 - -
Lcy10g1044 1043 SMART LRR_typ_2 123 146 IPR003591 -
Lcy10g1044 1043 SMART LRR_typ_2 593 616 IPR003591 -
Lcy10g1044 1043 SMART LRR_typ_2 243 267 IPR003591 -
Lcy10g1044 1043 SMART LRR_typ_2 147 171 IPR003591 -
Lcy10g1044 1043 SMART LRR_typ_2 545 568 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1044 Lcy-Chr10:32558569 Lcy7g0396 Lcy-Chr7:3370972 3.30E-64 dispersed
Lcy10g1044 Lcy-Chr10:32558569 Lcy3g0415 Lcy-Chr3:13866247 4.05E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65373 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1044 - - - 0.0