Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1073 ATGTCCGCCTCCGACGCCGCCACCAACAATGCCGCCATAATCGACCATCCCCAACACAGACATACCCAACAACAACAGCACCAACCAAATCAGACTTCCAACAATGGCGCTTTGGCCGTCAAGAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGCGGCCGCCGTATTCGTATGCCCATCATCTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCCGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGCGGCGGTCCCACTGCCGCCGCTTCCTCTTCTTCCTCCCCTTCTCTCGACCACAAGCCGCTTCTCGCTCCGGCGCCCTTCATTCTCGGCAAGCGCGTCAGGACCGACGACGATGGAGGTAGTAAAGACGGCGGTGGCGGTGGCATTTCGGTTGGACCCTCTGTCGGTTCGATTATGGGTCCGGCTGCCGCGGGTGGGTACTGGGCGATTCCTGCGAGGCCTGATTTCGGACAGTTGTGGAGCTTCGCCGCCGCCGCGGCTCCCGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTCGCTGTTCGTTCAACAGCAATCGATCGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTCCCGGGGCATCTGAATTTGCTCGCTTCTTTATCGGGTGGACCGGGAAGTTCCGGCCGGAGAGATAACGACCACCGTTGA 792 62.25 MSASDAATNNAAIIDHPQHRHTQQQQHQPNQTSNNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGPTAAASSSSSPSLDHKPLLAPAPFILGKRVRTDDDGGSKDGGGGGISVGPSVGSIMGPAAAGGYWAIPARPDFGQLWSFAAAAAPEMVIQPAAVSHQASLFVQQQSIGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32925040 32925831 - Maker00008562 Lcy10g1073 644584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1073 263 MobiDBLite consensus disorder prediction 110 135 - -
Lcy10g1073 263 ProSiteProfiles TCP domain profile. 45 99 IPR017887 -
Lcy10g1073 263 MobiDBLite consensus disorder prediction 148 169 - -
Lcy10g1073 263 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 154 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Lcy10g1073 263 MobiDBLite consensus disorder prediction 42 57 - -
Lcy10g1073 263 MobiDBLite consensus disorder prediction 1 39 - -
Lcy10g1073 263 Pfam TCP family transcription factor 45 121 IPR017887 -
Lcy10g1073 263 MobiDBLite consensus disorder prediction 1 57 - -
Lcy10g1073 263 MobiDBLite consensus disorder prediction 110 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1073 Lcy-Chr10:32925040 Lcy7g0833 Lcy-Chr7:8212236 4.56E-93 dispersed
Lcy10g1073 Lcy-Chr10:32925040 Lcy2g0580 Lcy-Chr2:4966705 1.30E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18964 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1073 K16221 - csv:101214586 357.836