Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1073 ATGTCCGCCTCCGACGCCGCCACCAACAATGCCGCCATAATCGACCATCCCCAACACAGACATACCCAACAACAACAGCACCAACCAAATCAGACTTCCAACAATGGCGCTTTGGCCGTCAAGAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGCGGCCGCCGTATTCGTATGCCCATCATCTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCCGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGCGGCGGTCCCACTGCCGCCGCTTCCTCTTCTTCCTCCCCTTCTCTCGACCACAAGCCGCTTCTCGCTCCGGCGCCCTTCATTCTCGGCAAGCGCGTCAGGACCGACGACGATGGAGGTAGTAAAGACGGCGGTGGCGGTGGCATTTCGGTTGGACCCTCTGTCGGTTCGATTATGGGTCCGGCTGCCGCGGGTGGGTACTGGGCGATTCCTGCGAGGCCTGATTTCGGACAGTTGTGGAGCTTCGCCGCCGCCGCGGCTCCCGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTCGCTGTTCGTTCAACAGCAATCGATCGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTCCCGGGGCATCTGAATTTGCTCGCTTCTTTATCGGGTGGACCGGGAAGTTCCGGCCGGAGAGATAACGACCACCGTTGA 792 62.25 MSASDAATNNAAIIDHPQHRHTQQQQHQPNQTSNNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGPTAAASSSSSPSLDHKPLLAPAPFILGKRVRTDDDGGSKDGGGGGISVGPSVGSIMGPAAAGGYWAIPARPDFGQLWSFAAAAAPEMVIQPAAVSHQASLFVQQQSIGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32925040 32925831 - Maker00008562 Lcy10g1073 644584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1073 263 MobiDBLite consensus disorder prediction 110 135 - -
Lcy10g1073 263 ProSiteProfiles TCP domain profile. 45 99 IPR017887 -
Lcy10g1073 263 MobiDBLite consensus disorder prediction 148 169 - -
Lcy10g1073 263 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 154 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Lcy10g1073 263 MobiDBLite consensus disorder prediction 42 57 - -
Lcy10g1073 263 MobiDBLite consensus disorder prediction 1 39 - -
Lcy10g1073 263 Pfam TCP family transcription factor 45 121 IPR017887 -
Lcy10g1073 263 MobiDBLite consensus disorder prediction 1 57 - -
Lcy10g1073 263 MobiDBLite consensus disorder prediction 110 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1073 K16221 - - csv:101214586 357.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1073 Lcy-Chr10:32925040 Lcy7g0833 Lcy-Chr7:8212236 4.56E-93 dispersed
Lcy10g1073 Lcy-Chr10:32925040 Lcy2g0580 Lcy-Chr2:4966705 1.30E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1073 . 43 264 TCP Transcription Factor Family AT5G23280 62.9 2.3e-64 243.0
Lcy7g0833 . 36 261 TCP Transcription Factor Family AT5G23280 59.1 2.2e-59 226.5
Lcy13g0617 . 3 344 TCP Transcription Factor Family AT2G45680 51.2 6.0e-71 265.4
Lcy5g2557 . 59 158 TCP Transcription Factor Family AT3G47620 75.7 7.8e-37 152.5
Lcy10g0080 . 115 380 TCP Transcription Factor Family AT3G27010 59.2 1.9e-60 230.3
Lcy3g1497 . 1 180 TCP Transcription Factor Family AT3G27010 51.0 4.6e-38 156.0
Lcy10g1073 . 1 262 TCP Transcription Factor Family AT5G08330 57.7 1.4e-66 250.4
Lcy7g0833 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 2.5e-60 229.6
Lcy3g0222 . 30 141 TCP Transcription Factor Family AT3G02150 68.1 3.3e-37 153.3
Lcy4g0720 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 6.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18964 None None None None Lcy TF