Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g1080 | ATGAGTGAGACGATGGAGAAATACTTGAGAAAGAACTTCGAACTCGAACACAAAGGTCCCAAGGAGGAGGCTCAAATGCGATGGCGATCCGCCGTCTCTATCGTCAAGAATCGCCGCCGGAGGTTTCGCATGGTTGCTGATCTCGAAAAGCGTGCTCAGGCTGAGGAGAAGCGCAAGAAACTCCAGGTTTTTATTTGTATTTACCTTTTCTCTTCTTGTTCTGTTCAGGAAAAGATACGAGTAGCTCTATACGTACAAAAAGCAGCATTACATTTCATTGATGCCGGGAAGCGAGGTGATTACAAGCTCTCCACAGAAGTAAGGGAAGCTGGTTTCGGAGTTGAACCTGATGTATTAGCATCCATTGTTCAGACCCACAACACCAAGAGTTTGGAATATTATGCGGGCGTTGCCGGATTGGCAAGAGAATTAAAAGTTTCTCTGAAAGATGGAATTTTTACAAGTGAAATACCTTCAAGGCAGAATATATACGGCATCAACCGTTATGTTGAGAAGCCTTCAAGAGGCTTTTGGATGTTTGTATGGGAAGCCCTGCATGATTTGACTCTCATCATTCTCTTGGTTTCTGCTGTGGTTTCCATTGGCGTTGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGATGGACTTGGAATAATGCTAAGTATTTTTCTGGTCGTGATAGTAACGGCAATCAGTGACTATAATCAGTCATTGCAATTTAAGGACTTGGAAAAGCAGAAGAAAAACATTATTATTCAAGTTACAAGAGATAGATGCAGACAGAAGGTTTCCATTTATGACTTGGTTGTTGGGGATATTGTTCATTTGTCTATTGGAGATCAAGTCCCTGCTGATGGCGTTTTGGTGTCAGGCTACAGTTTATCAATTGATGAATCGAGCTTGTCAGGTGAAAGTGAACCTGTAAACGTTGATGATAATAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGGTCTGGTAAAATGCTAGTTGCCTCTGTTGGCATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGAGGAGATGACGAAACGCCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATAATTGGAAAGATCGGCTTGGTTTTCGCTGTGTTAACTTTCCTAGTTCTGATCTCAAGGTTTTTTGTGAACAAAGCATTACACAATCAGATTGAGCACTGGTCCTCCCAAGATGCATCTACACTTCTGAATTACTTTGCCATTGCTGTGATTATAATTGTTGTTGCAGTTCCAGAAGGATTGCCCCTGGCAGTAACATTAAGTCTTGCCTTTGCCATGAAAAGGTTAATGAAGGATAAGGCACTAGTGAGGCATCTCTCTGCTTGTGAGACGATGGGCTCCGCAACCTGCATTTGCACTGACAAAACAGGTACATTGACAACAAATCATATGGTCGTTGATAGAATGTGGATCTGTGAAGAAACGAGGACAATAAAAAATTCCCACGACGAAACTGCTTTGAAAACCTCCGTAAATGAAACGGTATACAATCTCCTTGTACAATCTATATTTCAGAATACTAGCTCAGAGGTGGTCAAAGGCAAAGACGGGAGAAACACCATCTTAGGTAGTCCAACTGAGACTGCATTGCTAGAATTTGGCTTGCTTTTGGGTGGTGCTTTTGGTTCATTGAATGATGAGTATAAGATCGTCAAAGTTGAGCCATTCAATTCAAATAGAAAGAAAATGTCTGTTCTTGTTGCTCTTCCCAGTGGTGGGTTTCGAGCATTCTGCAAGGGAGCATCTGAAATCATTTTATCTATGTGTGACAAGGTTCTCAGTCCTAATGGAGAAGCATTGCCTCTTTCAGACGAAAAAAGAACAGACATCTTGAACATCATCAATAGTTTTGCCAGCGACGCTCTTAGAACTCTATGCATCGCTTACAAGGATATAGAAGATTCTTCAGCACCAGATACAATTCCCGATGATGACTTTACTTTAATTGCTGTTATTGGCATTAAAGATCCTGTACGTCCGGGTGTAAAGGAGGCAGTTCAGGCGTGTTTGGCTGCTGGAATAACTGTAAGGATGGTAACTGGCGATAACATAAACACGGCTAAAGCCATAGCCAAAGAGTGTGGCATTTTGACAGAAGATGGTTTGGCAATAGAAGGGCCAGAGTTCCGCAACAAGAGCCAAGATGAAATGGAGAAGTTAATACCGAAACTCCAGGTGATGGCTCGATCTTCTCCTCTTGACAAGCATATGTTGGTAGGGCAGTTGAGGAAAACTTTCAAAGAAGTGGTGGCTGTCACAGGTGATGGGACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGATTGGCCATGGGTATTGCGGGAACAGAGGTTGCAAAAGAAAATGCGGACGTAGTCATAATGGATGATAATTTCACAACTATTGTGAATGTTGCGAGATGGGGACGTGCAGTCTACATCAACATTCAGAAGTTCGTACAGTTCCAGCTTACAGTTAACGTAGTCGCTCTCATGCTCAATTTTATATCTGCATGCGCCTCAGGTTCTGCTCCTCTCACTGCCGTTCAAATGCTGTGGGTGAACCTGATCATGGACACGCTCGGAGCTCTGGCTTTGGCCACAGAGCCTCCAAACGAGGGGCTGATGAAAAGAAAACCAATTGGGAGAAACGTAAGTATCATCACTGGGATTATGTGGAGGAACATCATCGGTCAGAGCTTCTACCAAATCACTGTCTTATTACTCCTGAGATTTGAAGGGAAGCGCCTACTGGAGCTCACTGGCCCTGACTCAAGCATCATTCTCGACACATTCATTTTCAACTCCTTCGTGTTCTGCCAGGCATGTGTTTTCAATGAAATAAACAGCCGCGACATGGAGAAGATAAACGTTTTCAAAGGGATGTTCGGGAGTTGGGTTTTCATAGGAGTAATGGCGTCGACCGTAGCTTTCCAAATCATAATAGTAGAATTTCTTGGGACATTCGCAGAAACAGTGCCATTGAGCTGGAATTTATGGGTAGCGAGCATCGTAATCGGAGCTTTGAGTTTGCCAATAGCCATGGTGCTCAAATGCATTCCTCTTTCAAACTCCAAACCTAAATGTCACTTCCACGATGGTTACGAGCCCCTCCCTACTGGCCCAGAGTTGGCTTGA | 3168 | 43.62 | MSETMEKYLRKNFELEHKGPKEEAQMRWRSAVSIVKNRRRRFRMVADLEKRAQAEEKRKKLQVFICIYLFSSCSVQEKIRVALYVQKAALHFIDAGKRGDYKLSTEVREAGFGVEPDVLASIVQTHNTKSLEYYAGVAGLARELKVSLKDGIFTSEIPSRQNIYGINRYVEKPSRGFWMFVWEALHDLTLIILLVSAVVSIGVGNATEGWPKGMYDGLGIMLSIFLVVIVTAISDYNQSLQFKDLEKQKKNIIIQVTRDRCRQKVSIYDLVVGDIVHLSIGDQVPADGVLVSGYSLSIDESSLSGESEPVNVDDNRPFLLAGTKVQDGSGKMLVASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFLVLISRFFVNKALHNQIEHWSSQDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVDRMWICEETRTIKNSHDETALKTSVNETVYNLLVQSIFQNTSSEVVKGKDGRNTILGSPTETALLEFGLLLGGAFGSLNDEYKIVKVEPFNSNRKKMSVLVALPSGGFRAFCKGASEIILSMCDKVLSPNGEALPLSDEKRTDILNIINSFASDALRTLCIAYKDIEDSSAPDTIPDDDFTLIAVIGIKDPVRPGVKEAVQACLAAGITVRMVTGDNINTAKAIAKECGILTEDGLAIEGPEFRNKSQDEMEKLIPKLQVMARSSPLDKHMLVGQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACASGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMKRKPIGRNVSIITGIMWRNIIGQSFYQITVLLLLRFEGKRLLELTGPDSSIILDTFIFNSFVFCQACVFNEINSRDMEKINVFKGMFGSWVFIGVMASTVAFQIIIVEFLGTFAETVPLSWNLWVASIVIGALSLPIAMVLKCIPLSNSKPKCHFHDGYEPLPTGPELA | 1055 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33013924 | 33020756 | + | Maker00008479 | Lcy10g1080 | 644591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g1080 | 1055 | Pfam | E1-E2 ATPase | 254 | 447 | - | - | |
| Lcy10g1080 | 1055 | PANTHER | CATION TRANSPORTING ATPASE | 102 | 1032 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lcy10g1080 | 1055 | Gene3D | - | 183 | 1030 | - | - | |
| Lcy10g1080 | 1055 | SFLD | p-type atpase | 450 | 821 | IPR044492 | - | |
| Lcy10g1080 | 1055 | SUPERFAMILY | HAD-like | 467 | 874 | IPR036412 | - | |
| Lcy10g1080 | 1055 | Pfam | Cation transporter/ATPase, N-terminus | 134 | 200 | IPR004014 | - | |
| Lcy10g1080 | 1055 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 125 | 1032 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lcy10g1080 | 1055 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 133 | 1032 | IPR023298 | - | |
| Lcy10g1080 | 1055 | Gene3D | - | 151 | 351 | - | - | |
| Lcy10g1080 | 1055 | CDD | P-type_ATPase_Ca_PMCA-like | 160 | 902 | - | - | |
| Lcy10g1080 | 1055 | Pfam | Cation transport ATPase (P-type) | 528 | 608 | - | - | |
| Lcy10g1080 | 1055 | FunFam | Calcium-transporting ATPase | 665 | 814 | - | - | |
| Lcy10g1080 | 1055 | NCBIfam | HAD-IC family P-type ATPase | 739 | 854 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy10g1080 | 1055 | NCBIfam | HAD-IC family P-type ATPase | 220 | 532 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy10g1080 | 1055 | NCBIfam | HAD-IC family P-type ATPase | 565 | 714 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy10g1080 | 1055 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 470 | 476 | IPR018303 | - | |
| Lcy10g1080 | 1055 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 474 | 678 | IPR023299 | GO:0000166(InterPro) | |
| Lcy10g1080 | 1055 | FunFam | Calcium-transporting ATPase | 230 | 351 | - | - | |
| Lcy10g1080 | 1055 | Gene3D | - | 478 | 673 | IPR023299 | GO:0000166(InterPro) | |
| Lcy10g1080 | 1055 | PRINTS | H+-transporting ATPase (proton pump) signature | 769 | 785 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy10g1080 | 1055 | PRINTS | H+-transporting ATPase (proton pump) signature | 626 | 644 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy10g1080 | 1055 | PRINTS | H+-transporting ATPase (proton pump) signature | 801 | 826 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy10g1080 | 1055 | FunFam | Calcium-transporting ATPase | 786 | 1034 | - | - | |
| Lcy10g1080 | 1055 | PRINTS | P-type cation-transporting ATPase superfamily signature | 468 | 482 | - | - | |
| Lcy10g1080 | 1055 | PRINTS | P-type cation-transporting ATPase superfamily signature | 666 | 677 | - | - | |
| Lcy10g1080 | 1055 | PRINTS | P-type cation-transporting ATPase superfamily signature | 793 | 805 | - | - | |
| Lcy10g1080 | 1055 | PRINTS | P-type cation-transporting ATPase superfamily signature | 769 | 788 | - | - | |
| Lcy10g1080 | 1055 | PRINTS | P-type cation-transporting ATPase superfamily signature | 299 | 313 | - | - | |
| Lcy10g1080 | 1055 | PRINTS | P-type cation-transporting ATPase superfamily signature | 688 | 698 | - | - | |
| Lcy10g1080 | 1055 | Gene3D | - | 465 | 814 | IPR023214 | - | |
| Lcy10g1080 | 1055 | SMART | Cation_ATPase_N_a_2 | 131 | 205 | IPR004014 | - | |
| Lcy10g1080 | 1055 | FunFam | Calcium-transporting ATPase | 478 | 673 | - | - | |
| Lcy10g1080 | 1055 | Pfam | haloacid dehalogenase-like hydrolase | 658 | 783 | - | - | |
| Lcy10g1080 | 1055 | SFLD | C1.7: P-type atpase like | 450 | 821 | - | - | |
| Lcy10g1080 | 1055 | FunFam | Calcium-transporting ATPase | 20 | 94 | - | - | |
| Lcy10g1080 | 1055 | SUPERFAMILY | Calcium ATPase, transduction domain A | 253 | 347 | IPR008250 | - | |
| Lcy10g1080 | 1055 | Gene3D | - | 22 | 95 | - | - | |
| Lcy10g1080 | 1055 | Pfam | Cation transporting ATPase, C-terminus | 854 | 1029 | IPR006068 | - | |
| Lcy10g1080 | 1055 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 9 | 53 | IPR024750 | GO:0005516(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1080 | Lcy-Chr10:33013924 | Lcy9g2037 | Lcy-Chr9:45244753 | 0 | dispersed | |
| Lcy10g1080 | Lcy-Chr10:33013924 | Lcy11g0558 | Lcy-Chr11:13665440 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g1080 | K01537 | - | csv:101203529 | 1846.25 |