Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1080 ATGAGTGAGACGATGGAGAAATACTTGAGAAAGAACTTCGAACTCGAACACAAAGGTCCCAAGGAGGAGGCTCAAATGCGATGGCGATCCGCCGTCTCTATCGTCAAGAATCGCCGCCGGAGGTTTCGCATGGTTGCTGATCTCGAAAAGCGTGCTCAGGCTGAGGAGAAGCGCAAGAAACTCCAGGTTTTTATTTGTATTTACCTTTTCTCTTCTTGTTCTGTTCAGGAAAAGATACGAGTAGCTCTATACGTACAAAAAGCAGCATTACATTTCATTGATGCCGGGAAGCGAGGTGATTACAAGCTCTCCACAGAAGTAAGGGAAGCTGGTTTCGGAGTTGAACCTGATGTATTAGCATCCATTGTTCAGACCCACAACACCAAGAGTTTGGAATATTATGCGGGCGTTGCCGGATTGGCAAGAGAATTAAAAGTTTCTCTGAAAGATGGAATTTTTACAAGTGAAATACCTTCAAGGCAGAATATATACGGCATCAACCGTTATGTTGAGAAGCCTTCAAGAGGCTTTTGGATGTTTGTATGGGAAGCCCTGCATGATTTGACTCTCATCATTCTCTTGGTTTCTGCTGTGGTTTCCATTGGCGTTGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGATGGACTTGGAATAATGCTAAGTATTTTTCTGGTCGTGATAGTAACGGCAATCAGTGACTATAATCAGTCATTGCAATTTAAGGACTTGGAAAAGCAGAAGAAAAACATTATTATTCAAGTTACAAGAGATAGATGCAGACAGAAGGTTTCCATTTATGACTTGGTTGTTGGGGATATTGTTCATTTGTCTATTGGAGATCAAGTCCCTGCTGATGGCGTTTTGGTGTCAGGCTACAGTTTATCAATTGATGAATCGAGCTTGTCAGGTGAAAGTGAACCTGTAAACGTTGATGATAATAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGGTCTGGTAAAATGCTAGTTGCCTCTGTTGGCATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGAGGAGATGACGAAACGCCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATAATTGGAAAGATCGGCTTGGTTTTCGCTGTGTTAACTTTCCTAGTTCTGATCTCAAGGTTTTTTGTGAACAAAGCATTACACAATCAGATTGAGCACTGGTCCTCCCAAGATGCATCTACACTTCTGAATTACTTTGCCATTGCTGTGATTATAATTGTTGTTGCAGTTCCAGAAGGATTGCCCCTGGCAGTAACATTAAGTCTTGCCTTTGCCATGAAAAGGTTAATGAAGGATAAGGCACTAGTGAGGCATCTCTCTGCTTGTGAGACGATGGGCTCCGCAACCTGCATTTGCACTGACAAAACAGGTACATTGACAACAAATCATATGGTCGTTGATAGAATGTGGATCTGTGAAGAAACGAGGACAATAAAAAATTCCCACGACGAAACTGCTTTGAAAACCTCCGTAAATGAAACGGTATACAATCTCCTTGTACAATCTATATTTCAGAATACTAGCTCAGAGGTGGTCAAAGGCAAAGACGGGAGAAACACCATCTTAGGTAGTCCAACTGAGACTGCATTGCTAGAATTTGGCTTGCTTTTGGGTGGTGCTTTTGGTTCATTGAATGATGAGTATAAGATCGTCAAAGTTGAGCCATTCAATTCAAATAGAAAGAAAATGTCTGTTCTTGTTGCTCTTCCCAGTGGTGGGTTTCGAGCATTCTGCAAGGGAGCATCTGAAATCATTTTATCTATGTGTGACAAGGTTCTCAGTCCTAATGGAGAAGCATTGCCTCTTTCAGACGAAAAAAGAACAGACATCTTGAACATCATCAATAGTTTTGCCAGCGACGCTCTTAGAACTCTATGCATCGCTTACAAGGATATAGAAGATTCTTCAGCACCAGATACAATTCCCGATGATGACTTTACTTTAATTGCTGTTATTGGCATTAAAGATCCTGTACGTCCGGGTGTAAAGGAGGCAGTTCAGGCGTGTTTGGCTGCTGGAATAACTGTAAGGATGGTAACTGGCGATAACATAAACACGGCTAAAGCCATAGCCAAAGAGTGTGGCATTTTGACAGAAGATGGTTTGGCAATAGAAGGGCCAGAGTTCCGCAACAAGAGCCAAGATGAAATGGAGAAGTTAATACCGAAACTCCAGGTGATGGCTCGATCTTCTCCTCTTGACAAGCATATGTTGGTAGGGCAGTTGAGGAAAACTTTCAAAGAAGTGGTGGCTGTCACAGGTGATGGGACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGATTGGCCATGGGTATTGCGGGAACAGAGGTTGCAAAAGAAAATGCGGACGTAGTCATAATGGATGATAATTTCACAACTATTGTGAATGTTGCGAGATGGGGACGTGCAGTCTACATCAACATTCAGAAGTTCGTACAGTTCCAGCTTACAGTTAACGTAGTCGCTCTCATGCTCAATTTTATATCTGCATGCGCCTCAGGTTCTGCTCCTCTCACTGCCGTTCAAATGCTGTGGGTGAACCTGATCATGGACACGCTCGGAGCTCTGGCTTTGGCCACAGAGCCTCCAAACGAGGGGCTGATGAAAAGAAAACCAATTGGGAGAAACGTAAGTATCATCACTGGGATTATGTGGAGGAACATCATCGGTCAGAGCTTCTACCAAATCACTGTCTTATTACTCCTGAGATTTGAAGGGAAGCGCCTACTGGAGCTCACTGGCCCTGACTCAAGCATCATTCTCGACACATTCATTTTCAACTCCTTCGTGTTCTGCCAGGCATGTGTTTTCAATGAAATAAACAGCCGCGACATGGAGAAGATAAACGTTTTCAAAGGGATGTTCGGGAGTTGGGTTTTCATAGGAGTAATGGCGTCGACCGTAGCTTTCCAAATCATAATAGTAGAATTTCTTGGGACATTCGCAGAAACAGTGCCATTGAGCTGGAATTTATGGGTAGCGAGCATCGTAATCGGAGCTTTGAGTTTGCCAATAGCCATGGTGCTCAAATGCATTCCTCTTTCAAACTCCAAACCTAAATGTCACTTCCACGATGGTTACGAGCCCCTCCCTACTGGCCCAGAGTTGGCTTGA 3168 43.62 MSETMEKYLRKNFELEHKGPKEEAQMRWRSAVSIVKNRRRRFRMVADLEKRAQAEEKRKKLQVFICIYLFSSCSVQEKIRVALYVQKAALHFIDAGKRGDYKLSTEVREAGFGVEPDVLASIVQTHNTKSLEYYAGVAGLARELKVSLKDGIFTSEIPSRQNIYGINRYVEKPSRGFWMFVWEALHDLTLIILLVSAVVSIGVGNATEGWPKGMYDGLGIMLSIFLVVIVTAISDYNQSLQFKDLEKQKKNIIIQVTRDRCRQKVSIYDLVVGDIVHLSIGDQVPADGVLVSGYSLSIDESSLSGESEPVNVDDNRPFLLAGTKVQDGSGKMLVASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFLVLISRFFVNKALHNQIEHWSSQDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVDRMWICEETRTIKNSHDETALKTSVNETVYNLLVQSIFQNTSSEVVKGKDGRNTILGSPTETALLEFGLLLGGAFGSLNDEYKIVKVEPFNSNRKKMSVLVALPSGGFRAFCKGASEIILSMCDKVLSPNGEALPLSDEKRTDILNIINSFASDALRTLCIAYKDIEDSSAPDTIPDDDFTLIAVIGIKDPVRPGVKEAVQACLAAGITVRMVTGDNINTAKAIAKECGILTEDGLAIEGPEFRNKSQDEMEKLIPKLQVMARSSPLDKHMLVGQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACASGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMKRKPIGRNVSIITGIMWRNIIGQSFYQITVLLLLRFEGKRLLELTGPDSSIILDTFIFNSFVFCQACVFNEINSRDMEKINVFKGMFGSWVFIGVMASTVAFQIIIVEFLGTFAETVPLSWNLWVASIVIGALSLPIAMVLKCIPLSNSKPKCHFHDGYEPLPTGPELA 1055
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 33013924 33020756 + Maker00008479 Lcy10g1080 644591
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1080 1055 Pfam E1-E2 ATPase 254 447 - -
Lcy10g1080 1055 PANTHER CATION TRANSPORTING ATPASE 102 1032 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Lcy10g1080 1055 Gene3D - 183 1030 - -
Lcy10g1080 1055 SFLD p-type atpase 450 821 IPR044492 -
Lcy10g1080 1055 SUPERFAMILY HAD-like 467 874 IPR036412 -
Lcy10g1080 1055 Pfam Cation transporter/ATPase, N-terminus 134 200 IPR004014 -
Lcy10g1080 1055 NCBIfam calcium-translocating P-type ATPase, PMCA-type 125 1032 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Lcy10g1080 1055 SUPERFAMILY Calcium ATPase, transmembrane domain M 133 1032 IPR023298 -
Lcy10g1080 1055 Gene3D - 151 351 - -
Lcy10g1080 1055 CDD P-type_ATPase_Ca_PMCA-like 160 902 - -
Lcy10g1080 1055 Pfam Cation transport ATPase (P-type) 528 608 - -
Lcy10g1080 1055 FunFam Calcium-transporting ATPase 665 814 - -
Lcy10g1080 1055 NCBIfam HAD-IC family P-type ATPase 739 854 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1080 1055 NCBIfam HAD-IC family P-type ATPase 220 532 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1080 1055 NCBIfam HAD-IC family P-type ATPase 565 714 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1080 1055 ProSitePatterns E1-E2 ATPases phosphorylation site. 470 476 IPR018303 -
Lcy10g1080 1055 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 474 678 IPR023299 GO:0000166(InterPro)
Lcy10g1080 1055 FunFam Calcium-transporting ATPase 230 351 - -
Lcy10g1080 1055 Gene3D - 478 673 IPR023299 GO:0000166(InterPro)
Lcy10g1080 1055 PRINTS H+-transporting ATPase (proton pump) signature 769 785 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1080 1055 PRINTS H+-transporting ATPase (proton pump) signature 626 644 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1080 1055 PRINTS H+-transporting ATPase (proton pump) signature 801 826 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1080 1055 FunFam Calcium-transporting ATPase 786 1034 - -
Lcy10g1080 1055 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Lcy10g1080 1055 PRINTS P-type cation-transporting ATPase superfamily signature 666 677 - -
Lcy10g1080 1055 PRINTS P-type cation-transporting ATPase superfamily signature 793 805 - -
Lcy10g1080 1055 PRINTS P-type cation-transporting ATPase superfamily signature 769 788 - -
Lcy10g1080 1055 PRINTS P-type cation-transporting ATPase superfamily signature 299 313 - -
Lcy10g1080 1055 PRINTS P-type cation-transporting ATPase superfamily signature 688 698 - -
Lcy10g1080 1055 Gene3D - 465 814 IPR023214 -
Lcy10g1080 1055 SMART Cation_ATPase_N_a_2 131 205 IPR004014 -
Lcy10g1080 1055 FunFam Calcium-transporting ATPase 478 673 - -
Lcy10g1080 1055 Pfam haloacid dehalogenase-like hydrolase 658 783 - -
Lcy10g1080 1055 SFLD C1.7: P-type atpase like 450 821 - -
Lcy10g1080 1055 FunFam Calcium-transporting ATPase 20 94 - -
Lcy10g1080 1055 SUPERFAMILY Calcium ATPase, transduction domain A 253 347 IPR008250 -
Lcy10g1080 1055 Gene3D - 22 95 - -
Lcy10g1080 1055 Pfam Cation transporting ATPase, C-terminus 854 1029 IPR006068 -
Lcy10g1080 1055 Pfam Ca2+-ATPase N terminal autoinhibitory domain 9 53 IPR024750 GO:0005516(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1080 Lcy-Chr10:33013924 Lcy9g2037 Lcy-Chr9:45244753 0 dispersed
Lcy10g1080 Lcy-Chr10:33013924 Lcy11g0558 Lcy-Chr11:13665440 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1080 K01537 - csv:101203529 1846.25