Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g1081 | ATGGCGAGCCGATACTGGATGGTCTCTTTACCCGTTCCGAGCTCCGCTTCTTCTCTATGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAACATTCCTAATCTCCGCGTTGGCACGCTGGATTCGCTCCTTTCCCTCAGCGACGATCTCCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCCCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCGGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTACCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCTAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTTCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACACTTCTTGTGATTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACACTGACTAGTTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAGTATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAATCAAGCGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTTTGTGCTGTACGTGTTTTTGCTGAGAGTATCCTGAGATACGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCTAACAGTTACTCGGTAAAGGTTCAATTGGCTATGCGATTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGCGATGGCTGGTCTCGGAGGAGATTCTGATGCACATCCATATGTCTCCTTCACAATCAATCTTGCCTAATTCGCCTCCTTTTGACGTCCAAACTTCAGAAGAGGCTCTTAAGATTCAATTAGTTCGTGTTGGTTTTCATGGTGCTTCTGCCATGGGAGCCACTTATTGCAAGAGTTTAGGAATATAA | 1281 | 44.03 | MASRYWMVSLPVPSSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKSSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSYSVKVQLAMRLHIGKLKMKWEERWLVSEEILMHIHMSPSQSILPNSPPFDVQTSEEALKIQLVRVGFHGASAMGATYCKSLGI | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33024130 | 33029919 | - | Maker00008551 | Lcy10g1081 | 644592 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g1081 | 426 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 2 | 350 | IPR036132 | GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro) | |
Lcy10g1081 | 426 | Pfam | V-ATPase subunit C | 5 | 343 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Lcy10g1081 | 426 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 5 | 334 | - | - | |
Lcy10g1081 | 426 | CDD | V-ATPase_C | 5 | 357 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Lcy10g1081 | 426 | Gene3D | - | 41 | 312 | - | - | |
Lcy10g1081 | 426 | FunFam | V-type proton ATPase subunit C | 163 | 251 | - | - | |
Lcy10g1081 | 426 | Gene3D | - | 163 | 251 | - | - | |
Lcy10g1081 | 426 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 1 | 345 | IPR004907 | GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro) |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g1081 | K02148 | - | csv:101221574 | 641.343 |