Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g1081 | ATGGCGAGCCGATACTGGATGGTCTCTTTACCCGTTCCGAGCTCCGCTTCTTCTCTATGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAACATTCCTAATCTCCGCGTTGGCACGCTGGATTCGCTCCTTTCCCTCAGCGACGATCTCCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCCCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCGGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTACCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCTAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTTCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACACTTCTTGTGATTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACACTGACTAGTTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAGTATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAATCAAGCGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTTTGTGCTGTACGTGTTTTTGCTGAGAGTATCCTGAGATACGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCTAACAGTTACTCGGTAAAGGTTCAATTGGCTATGCGATTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGCGATGGCTGGTCTCGGAGGAGATTCTGATGCACATCCATATGTCTCCTTCACAATCAATCTTGCCTAATTCGCCTCCTTTTGACGTCCAAACTTCAGAAGAGGCTCTTAAGATTCAATTAGTTCGTGTTGGTTTTCATGGTGCTTCTGCCATGGGAGCCACTTATTGCAAGAGTTTAGGAATATAA | 1281 | 44.03 | MASRYWMVSLPVPSSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKSSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSYSVKVQLAMRLHIGKLKMKWEERWLVSEEILMHIHMSPSQSILPNSPPFDVQTSEEALKIQLVRVGFHGASAMGATYCKSLGI | 426 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33024130 | 33029919 | - | Maker00008551 | Lcy10g1081 | 644592 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g1081 | 426 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 2 | 350 | IPR036132 | GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro) | |
| Lcy10g1081 | 426 | Pfam | V-ATPase subunit C | 5 | 343 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lcy10g1081 | 426 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 5 | 334 | - | - | |
| Lcy10g1081 | 426 | CDD | V-ATPase_C | 5 | 357 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lcy10g1081 | 426 | Gene3D | - | 41 | 312 | - | - | |
| Lcy10g1081 | 426 | FunFam | V-type proton ATPase subunit C | 163 | 251 | - | - | |
| Lcy10g1081 | 426 | Gene3D | - | 163 | 251 | - | - | |
| Lcy10g1081 | 426 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 1 | 345 | IPR004907 | GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g1081 | K02148 | - | - | csv:101221574 | 641.343 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lcy13g2145 | . | 9 | 912 | Primary Pumps ATPases(2) | AT1G10130 | 72.7 | 0.0e+00 | 1250.7 | |
| Lcy13g2144 | . | 20 | 157 | Primary Pumps ATPases(2) | AT1G10130 | 86.2 | 6.7e-59 | 226.9 | |
| Lcy3g0992 | . | 135 | 978 | Primary Pumps ATPases(2) | AT2G28520 | 56.5 | 6.3e-265 | 911.0 | |
| Lcy13g1938 | . | 1 | 898 | Primary Pumps ATPases(2) | AT2G28520 | 52.3 | 2.0e-255 | 879.4 | |
| Lcy8g1870 | . | 1 | 432 | Primary Pumps ATPases(2) | AT2G28520 | 71.5 | 8.7e-174 | 608.2 | |
| Lcy3g0992 | . | 135 | 984 | Primary Pumps ATPases(2) | AT2G21410 | 69.2 | 0.0e+00 | 1132.9 | |
| Lcy13g1938 | . | 1 | 904 | Primary Pumps ATPases(2) | AT2G21410 | 59.1 | 5.3e-304 | 1040.8 | |
| Lcy8g1870 | . | 9 | 432 | Primary Pumps ATPases(2) | AT2G21410 | 50.2 | 3.5e-114 | 410.2 | |
| Lcy3g0992 | . | 135 | 984 | Primary Pumps ATPases(2) | AT4G39080 | 70.1 | 0.0e+00 | 1140.9 | |
| Lcy13g1938 | . | 1 | 904 | Primary Pumps ATPases(2) | AT4G39080 | 59.9 | 4.9e-302 | 1034.2 | |
| Lcy8g1870 | . | 9 | 432 | Primary Pumps ATPases(2) | AT4G39080 | 51.4 | 6.0e-114 | 409.5 | |
| Lcy9g1569 | . | 40 | 179 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 3.9e-61 | 231.5 | |
| Lcy13g1930 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.6 | |
| Lcy13g1930 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 1.9e-66 | 249.6 | |
| Lcy9g1569 | . | 36 | 179 | Primary Pumps ATPases(2) | AT1G75630 | 77.5 | 4.9e-54 | 208.4 | |
| Lcy13g1930 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.8e-73 | 272.7 | |
| Lcy9g1569 | . | 36 | 179 | Primary Pumps ATPases(2) | AT2G16510 | 97.2 | 5.8e-61 | 231.1 | |
| Lcy13g1930 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.3e-52 | 200.7 | |
| Lcy9g1569 | . | 36 | 135 | Primary Pumps ATPases(2) | AT1G19910 | 96.0 | 8.0e-39 | 157.1 | |
| Lcy9g1819 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.6 | 1.7e-71 | 266.5 | |
| Lcy13g1750 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.6 | 3.0e-71 | 265.8 | |
| Lcy9g1569 | . | 41 | 179 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 228.0 | |
| Lcy13g1930 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 228.0 | |
| Lcy9g1819 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.7 | 1.1e-75 | 280.4 | |
| Lcy13g1750 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 72.9 | 4.7e-71 | 265.0 | |
| Lcy11g0222 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 81.2 | 0.0e+00 | 1684.8 | |
| Lcy11g0222 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.9 | 0.0e+00 | 1682.5 | |
| Lcy13g2145 | . | 9 | 912 | Primary Pumps ATPases(2) | AT1G10130 | 72.7 | 0.0e+00 | 1250.7 | |
| Lcy13g2144 | . | 20 | 157 | Primary Pumps ATPases(2) | AT1G10130 | 86.2 | 6.7e-59 | 226.9 | |
| Lcy11g0222 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.1 | 0.0e+00 | 1329.3 | |
| Lcy6g1047 | . | 1 | 179 | Primary Pumps ATPases(2) | AT4G02620 | 58.1 | 5.2e-49 | 191.0 | |
| Lcy2g1678 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 7.3e-269 | 923.3 | |
| Lcy2g1657 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.7 | 2.1e-268 | 921.8 | |
| Lcy3g0877 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 2.1e-268 | 921.8 | |
| Lcy10g1081 | . | 1 | 343 | Primary Pumps ATPases(2) | AT1G12840 | 85.1 | 9.6e-168 | 587.0 | |
| Lcy8g0673 | . | 1 | 262 | Primary Pumps ATPases(2) | AT3G58730 | 81.7 | 2.0e-116 | 416.0 | |
| Lcy1g1194 | . | 3 | 455 | Primary Pumps ATPases(2) | AT3G42050 | 80.1 | 5.0e-208 | 721.1 | |
| Lcy13g1930 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.8e-73 | 272.7 | |
| Lcy9g1569 | . | 36 | 179 | Primary Pumps ATPases(2) | AT2G16510 | 97.2 | 5.8e-61 | 231.1 | |
| Lcy2g1678 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 1.8e-270 | 928.7 | |
| Lcy2g1657 | . | 6 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 96.3 | 1.9e-269 | 925.2 | |
| Lcy3g0877 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 3.3e-269 | 924.5 | |
| Lcy10g0065 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 76.5 | 9.2e-66 | 247.3 | |
| Lcy2g1657 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 1.5e-266 | 915.6 | |
| Lcy2g1678 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 1.5e-266 | 915.6 | |
| Lcy3g0877 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 4.4e-266 | 914.1 | |
| Lcy3g0992 | . | 135 | 978 | Primary Pumps ATPases(2) | AT2G28520 | 56.5 | 6.3e-265 | 911.0 | |
| Lcy13g1938 | . | 1 | 898 | Primary Pumps ATPases(2) | AT2G28520 | 52.3 | 2.0e-255 | 879.4 | |
| Lcy8g1870 | . | 1 | 432 | Primary Pumps ATPases(2) | AT2G28520 | 71.5 | 8.7e-174 | 608.2 | |
| Lcy10g0408 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.7e-192 | 667.2 | |
| Lcy10g0065 | . | 1 | 223 | Primary Pumps ATPases(2) | AT4G11150 | 75.4 | 6.2e-85 | 311.2 | |
| Lcy3g2313 | . | 1 | 624 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1176.0 | |
| Lcy2g1678 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 7.3e-269 | 923.3 | |
| Lcy2g1657 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.7 | 2.1e-268 | 921.8 | |
| Lcy3g0877 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 2.1e-268 | 921.8 | |
| Lcy2g1678 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 1.8e-270 | 928.7 | |
| Lcy2g1657 | . | 6 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 96.3 | 1.9e-269 | 925.2 | |
| Lcy3g0877 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 3.3e-269 | 924.5 | |
| Lcy2g1657 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 1.5e-266 | 915.6 | |
| Lcy2g1678 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 1.5e-266 | 915.6 | |
| Lcy3g0877 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 4.4e-266 | 914.1 | |
| Lcy10g1081 | . | 1 | 343 | Primary Pumps ATPases(2) | AT1G12840 | 85.1 | 9.6e-168 | 587.0 | |
| Lcy8g0673 | . | 1 | 262 | Primary Pumps ATPases(2) | AT3G58730 | 81.7 | 2.0e-116 | 416.0 | |
| Lcy10g0065 | . | 1 | 223 | Primary Pumps ATPases(2) | AT4G11150 | 75.4 | 6.2e-85 | 311.2 | |
| Lcy10g0065 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 1.0e-74 | 277.3 | |
| Lcy10g0065 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 76.5 | 9.2e-66 | 247.3 | |
| Lcy6g1047 | . | 1 | 179 | Primary Pumps ATPases(2) | AT4G02620 | 58.1 | 5.2e-49 | 191.0 | |
| Lcy1g1194 | . | 3 | 455 | Primary Pumps ATPases(2) | AT3G42050 | 80.1 | 5.0e-208 | 721.1 | |
| Lcy3g0992 | . | 135 | 978 | Primary Pumps ATPases(2) | AT2G28520 | 56.5 | 6.3e-265 | 911.0 | |
| Lcy13g1938 | . | 1 | 898 | Primary Pumps ATPases(2) | AT2G28520 | 52.3 | 2.0e-255 | 879.4 | |
| Lcy8g1870 | . | 1 | 432 | Primary Pumps ATPases(2) | AT2G28520 | 71.5 | 8.7e-174 | 608.2 | |
| Lcy3g0992 | . | 135 | 984 | Primary Pumps ATPases(2) | AT2G21410 | 69.2 | 0.0e+00 | 1132.9 | |
| Lcy13g1938 | . | 1 | 904 | Primary Pumps ATPases(2) | AT2G21410 | 59.1 | 5.3e-304 | 1040.8 | |
| Lcy8g1870 | . | 9 | 432 | Primary Pumps ATPases(2) | AT2G21410 | 50.2 | 3.5e-114 | 410.2 | |
| Lcy3g0992 | . | 135 | 984 | Primary Pumps ATPases(2) | AT4G39080 | 70.1 | 0.0e+00 | 1140.9 | |
| Lcy13g1938 | . | 1 | 904 | Primary Pumps ATPases(2) | AT4G39080 | 59.9 | 4.9e-302 | 1034.2 | |
| Lcy8g1870 | . | 9 | 432 | Primary Pumps ATPases(2) | AT4G39080 | 51.4 | 6.0e-114 | 409.5 | |
| Lcy9g1569 | . | 40 | 179 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 3.9e-61 | 231.5 | |
| Lcy13g1930 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.6 | |
| Lcy13g1930 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.3e-52 | 200.7 | |
| Lcy9g1569 | . | 36 | 135 | Primary Pumps ATPases(2) | AT1G19910 | 96.0 | 8.0e-39 | 157.1 | |
| Lcy9g1569 | . | 41 | 179 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 228.0 | |
| Lcy13g1930 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.2e-60 | 228.0 | |
| Lcy13g1930 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 1.9e-66 | 249.6 | |
| Lcy9g1569 | . | 36 | 179 | Primary Pumps ATPases(2) | AT1G75630 | 77.5 | 4.9e-54 | 208.4 | |
| Lcy13g1930 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.8e-73 | 272.7 | |
| Lcy9g1569 | . | 36 | 179 | Primary Pumps ATPases(2) | AT2G16510 | 97.2 | 5.8e-61 | 231.1 | |
| Lcy9g1819 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.7 | 1.1e-75 | 280.4 | |
| Lcy13g1750 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 72.9 | 4.7e-71 | 265.0 | |
| Lcy9g1819 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.6 | 1.7e-71 | 266.5 | |
| Lcy13g1750 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.6 | 3.0e-71 | 265.8 | |
| Lcy10g0408 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 5.7e-199 | 690.6 | |
| Lcy10g0408 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.7e-192 | 667.2 | |
| Lcy11g0222 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 81.2 | 0.0e+00 | 1684.8 | |
| Lcy11g0222 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.1 | 0.0e+00 | 1329.3 | |
| Lcy13g2145 | . | 9 | 912 | Primary Pumps ATPases(2) | AT1G10130 | 72.7 | 0.0e+00 | 1250.7 | |
| Lcy13g2144 | . | 20 | 157 | Primary Pumps ATPases(2) | AT1G10130 | 86.2 | 6.7e-59 | 226.9 | |
| Lcy11g0222 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.9 | 0.0e+00 | 1682.5 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007861 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 36 |