Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1081 ATGGCGAGCCGATACTGGATGGTCTCTTTACCCGTTCCGAGCTCCGCTTCTTCTCTATGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAACATTCCTAATCTCCGCGTTGGCACGCTGGATTCGCTCCTTTCCCTCAGCGACGATCTCCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCCCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCGGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTACCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCTAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTTCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACACTTCTTGTGATTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACACTGACTAGTTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAGTATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAATCAAGCGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTTTGTGCTGTACGTGTTTTTGCTGAGAGTATCCTGAGATACGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCTAACAGTTACTCGGTAAAGGTTCAATTGGCTATGCGATTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGCGATGGCTGGTCTCGGAGGAGATTCTGATGCACATCCATATGTCTCCTTCACAATCAATCTTGCCTAATTCGCCTCCTTTTGACGTCCAAACTTCAGAAGAGGCTCTTAAGATTCAATTAGTTCGTGTTGGTTTTCATGGTGCTTCTGCCATGGGAGCCACTTATTGCAAGAGTTTAGGAATATAA 1281 44.03 MASRYWMVSLPVPSSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKSSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSYSVKVQLAMRLHIGKLKMKWEERWLVSEEILMHIHMSPSQSILPNSPPFDVQTSEEALKIQLVRVGFHGASAMGATYCKSLGI 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33024130 33029919 - Maker00008551 Lcy10g1081 644592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1081 426 SUPERFAMILY Vacuolar ATP synthase subunit C 2 350 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Lcy10g1081 426 Pfam V-ATPase subunit C 5 343 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy10g1081 426 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Lcy10g1081 426 CDD V-ATPase_C 5 357 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy10g1081 426 Gene3D - 41 312 - -
Lcy10g1081 426 FunFam V-type proton ATPase subunit C 163 251 - -
Lcy10g1081 426 Gene3D - 163 251 - -
Lcy10g1081 426 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 345 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1081 K02148 - csv:101221574 641.343