Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1084 GTGATTGATCCAAGGAGGCTGAAGTTTCTTTTTCAGAAGGAGCTGAAGAACAGTGATGTTAGCTCTCTAAGGAGAATGATTCTCCCAAAGAAATCAGCTGAAACTCACCTCCCAGCTTTGGACTCTAAAGAAGGGATCATCATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTTAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTACGTACTTGAGAACACTGGGGACTTTGTCAATGCCCATGGCTTACATCTGGGAGATTTCATCATGGTTTACCAAGATTGTGAAGATCAAAATTATGTCATTCAAGCAAAAAAGGCTTGTGATCAAGAAATATATTCGGACGTCGTATCGGAGAACGTCGTGATCAACGACATCGTCTTTGATGACTACGATGCTAGCAAAGCTGCCAGCTCCATATACGTGCCTAGTCCAACAATGGAAGATCCTGTGTCGTCGTTCATCTACGACACGAGTTCTGCCTTTGACAACGACTCGCCCTTCGACTTTATGAGTAGCTCAATGACCAACTACTCGAGGATGGGAGCTCTCGAAGGCTTCGGATCGGTCGAGAATTTGTCTCTCGACGACTTCTACTAA 615 44.07 VIDPRRLKFLFQKELKNSDVSSLRRMILPKKSAETHLPALDSKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLHLGDFIMVYQDCEDQNYVIQAKKACDQEIYSDVVSENVVINDIVFDDYDASKAASSIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSSSMTNYSRMGALEGFGSVENLSLDDFY 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33051396 33052596 - Maker00008647 Lcy10g1084 644595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1084 204 SMART B3_2 11 113 IPR003340 GO:0003677(InterPro)
Lcy10g1084 204 Gene3D - 7 125 IPR015300 -
Lcy10g1084 204 ProSiteProfiles B3 DNA-binding domain profile. 11 113 IPR003340 GO:0003677(InterPro)
Lcy10g1084 204 CDD B3_DNA 9 111 IPR003340 GO:0003677(InterPro)
Lcy10g1084 204 Pfam B3 DNA binding domain 11 109 IPR003340 GO:0003677(InterPro)
Lcy10g1084 204 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 7 119 IPR044800 GO:0003700(InterPro)
Lcy10g1084 204 SUPERFAMILY DNA-binding pseudobarrel domain 9 109 IPR015300 -
Lcy10g1084 204 FunFam B3 domain-containing transcription factor FUS3 7 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1084 Lcy-Chr10:33051396 Lcy3g1405 Lcy-Chr3:40643074 1.77E-35 dispersed
Lcy10g1084 Lcy-Chr10:33051396 Lcy11g0020 Lcy-Chr11:189916 1.37E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18966 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1084 K09287 - csv:101222512 375.555