Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1089 ATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCAGCTCATGCTGCCGCAACTAATAGCTGTTTCACAGTTTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCGAGTGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGTTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCATTGTGGGAAATTGAGCCTTTAACTACATTTCCTATGTATCCTTCTCTATTTCCACTTAGATTGAAACGTCCATGGCATCCTGGAGTCTCTTCTGTTCATGATAACAGAGATGACGCATCTAATGGCTTAATGTGGCTTCGGGGAGGAGTTGGGGAACAGGGTTTACACTCACTGAATTTGCAATCCGTGGGTTCACTGCCCTGGTTGCAACAGAGACTTGATTCTTCCATGTTTGGAAATGATCATAACCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCAAACCTTGGAGGTGTTGATATGCTGAGACAGCAAATTTTGCATCTTCAACAGCCTTTCCAATATATTCAACAGGCAGGCTTCCATAATTCTCTGTTGCAGCTGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAACAGCAATTGGTTCAACAATCTATCCCTCAGAACATCCTCCAAGCACCAAGCCAAGTTATGGCAGAAAATCTACCCCAACATATTCTCCAGCAAACCCTACAAAATCAACCTGAGGATCTGCCAAACCAGCAACAGCATACTTATCATGATACCCTTCAGGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCAAATGTGCCATCACCCACATTTCCCAGAACAGACCTCATGGATTCGAACACAAATTACTCGGAAACCATTACCTCTAGAAGAAACATACTTGCTTCATCATGTGCTGAAGGGACTGGGAATCTTTCCAATATCTATAGGAGTGGACAGTCAATCCTAACTGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAGGTTGATGCTCACCCAAACTCAATGTCCTTTCCACCATTTTCTGGTAGAGACTCAATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTTAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCTTCTCCATCAATTGGTCCTGATTCATCCTCAAGGCCAATGGGAGACTCCGGATTTCAGAACTCTCTGTACAGTTGTGTCCAAGACTCCTCTGAGTTGTTGCACAGCTCAGGGCAAGTTGATCCATCAAATCCAACTCGGACATTTGTGAAGGTTTACAAATCCGGATCTTTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTCAATAATGTCTGGTATATCAAGATACTTTCTCCCCAGGATTTTCAGAAACTAGGGGAACAGGCGATCGAGTCCTTCAACCCTATCGTTGGTCAGCGACTAAGCAGTGGTGGCAATGAAGCCGAAAATGTTTCGGGGCTACCATCTGTTGGTTCGCTAGAATACTGA 1866 45.34 MPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGEQGLHSLNLQSVGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQILHLQQPFQYIQQAGFHNSLLQLQQQQQQQQQQQQQQQQQLVQQSIPQNILQAPSQVMAENLPQHILQQTLQNQPEDLPNQQQHTYHDTLQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTNYSETITSRRNILASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHSQVDAHPNSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSRPMGDSGFQNSLYSCVQDSSELLHSSGQVDPSNPTRTFVKVYKSGSFGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGEQAIESFNPIVGQRLSSGGNEAENVSGLPSVGSLEY 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33094954 33108551 - Maker00008400 Lcy10g1089 644600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1089 621 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 587 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy10g1089 621 SUPERFAMILY CAD & PB1 domains 488 570 - -
Lcy10g1089 621 Gene3D - 57 129 - -
Lcy10g1089 621 ProSiteProfiles PB1 domain profile. 496 581 IPR053793 -
Lcy10g1089 621 Gene3D - 492 585 - -
Lcy10g1089 621 MobiDBLite consensus disorder prediction 383 402 - -
Lcy10g1089 621 MobiDBLite consensus disorder prediction 602 621 - -
Lcy10g1089 621 Pfam Auxin response factor 19 101 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy10g1089 621 FunFam Auxin response factor 491 585 - -
Lcy10g1089 621 FunFam Auxin response factor 57 129 - -
Lcy10g1089 621 Pfam AUX/IAA family 492 582 IPR033389 -
Lcy10g1089 621 Coils Coil 244 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1089 Lcy-Chr10:33094954 Lcy1g0151 Lcy-Chr1:1404121 2.56E-159 dispersed
Lcy10g1089 Lcy-Chr10:33094954 Lcy5g1695 Lcy-Chr5:39392044 2.90E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1089 K14486 - csv:101208098 1151.73