Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1091 ATGGTGGCACATGCCTGCTGTCAAATCAATGGGAGAATGGACGGCGAGGATGAAAAGTATAGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGCAGATGTGGAGACGGATGAAGTATATGCCCAAATGACATTACAGCCGCTGACTGCAGTAAAATATCTTTACAACTCTGTTTTTCTTTCAGTTCTTCTACCCACGTTTAATACCTTAGCTCAATTTCTTTTATACATACAGCAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCAAGTAGACAGCCAACTAATTACTTTTGCAAGACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGCTAGAAAAGATCATGAAAGTTTTTTCTTGGAAGCGGTTGAGAAGGGTGCTGGGTCTCATTTAGTAAATTGGAATGTTGTGTCGAAACTTGGTCTAGGGATAGGATATTTAGGCTGTAAAAATGTACCCCTCTCGCAGTGGCTGTGGCAGTTTCCTTTAGAACCTCAGACTTTGTGGCATAAGTTAATTTCGAGTAAGTGTGATTTACATTCCAATGGTTAG 837 44.32 MVAHACCQINGRMDGEDEKYRGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQADVETDEVYAQMTLQPLTAVKYLYNSVFLSVLLPTFNTLAQFLLYIQQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRARKDHESFFLEAVEKGAGSHLVNWNVVSKLGLGIGYLGCKNVPLSQWLWQFPLEPQTLWHKLISSKCDLHSNG 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33126181 33129502 - Maker00008435 Lcy10g1091 644602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1091 278 SUPERFAMILY DNA-binding pseudobarrel domain 132 210 IPR015300 -
Lcy10g1091 278 Gene3D - 146 230 IPR015300 -
Lcy10g1091 278 CDD B3_DNA 147 215 IPR003340 GO:0003677(InterPro)
Lcy10g1091 278 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 79 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy10g1091 278 SMART B3_2 148 233 IPR003340 GO:0003677(InterPro)
Lcy10g1091 278 Pfam B3 DNA binding domain 148 216 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1091 Lcy-Chr10:33126181 Lcy1g0151 Lcy-Chr1:1404121 3.56E-72 dispersed
Lcy10g1091 Lcy-Chr10:33126181 Lcy5g1695 Lcy-Chr5:39392044 4.39E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18968 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1091 K14486 - csv:101208098 291.967