Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1106 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACAGTTGCAGCAGCTCTCACTTCTCCAGTAGCCTCCCATTTCTCTTCTTCCGCCTCCTCCCCCTCGCCGGACTCTGCGCCGTCGCTCTCCGACTGGAGATCTGCTCGGGCCACCTACTACGCCGCCTCCGATCCTCGCGATGCGGTCGGCGGAGCCTGTGGATATGGCGATTTAGTCAAGGCAGGTTATGGCATGGCGACGGTGGGTCTCAGCGAGGCGCTCTTCGAACGCGGCCAGATCTGCGGCGCCTGCTTTCAGCTCCGGTGTGTGGAGGATCTCCGGTGGTGTATTCCTGGCACCTCTATTATCGTTACGGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATTCAGACCTCCGATCTCAAGGGGAAAGAAGTGGTGCCTTATCTGCTAAACTATGCTCATGTTAGCCCGAGGCTTGTAGCTAATGAGTTGGTGGATGAGAAAAGGATGGGTAATTCAGTTAGATATCCGGGAAACCCTTGGATTGACAGTTTTTCACTTGCACCTGTGCTTCGTACTTCGGCTCTTTGTAATTCCAAGACAAAATGGATCAAATGCCGAAAGGAGGGGGGTATTCGATACACGATTTCTGGGTACGGCATCTACCTCTCAGTGTTGATAAGTAACGTTGCAGGCGCTGGAGATGTCAGTGCTGTAAAGATCAAGGGTGCGAGAACCGGTTGGCTTCCAATGGGTCGAAATTGGGGGCAAAACTGGCACATTAACGCTGATTTGAACAATCAGGCCCTTTCCTTCGAAGTCACTAGCAGTGATGGAGTAACAATTACGTCCTACAATGTTGCTCCAAAGGATTGGAACTTTGGGCAAACTTTTGAAGGCAAGCAATTTGAATCTTGA 1014 50.99 MSPSLPLHFLFTVAAALTSPVASHFSSSASSPSPDSAPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIQTSDLKGKEVVPYLLNYAHVSPRLVANELVDEKRMGNSVRYPGNPWIDSFSLAPVLRTSALCNSKTKWIKCRKEGGIRYTISGYGIYLSVLISNVAGAGDVSAVKIKGARTGWLPMGRNWGQNWHINADLNNQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEGKQFES 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33380233 33385788 - Maker00008644 Lcy10g1106 644617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1106 337 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Lcy10g1106 337 PANTHER EXPANSIN-A15 20 335 IPR002963 GO:0009664(InterPro)
Lcy10g1106 337 SUPERFAMILY PHL pollen allergen 240 332 IPR036749 -
Lcy10g1106 337 CDD DPBB_EXPA_N 42 167 - -
Lcy10g1106 337 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 253 332 IPR007117 -
Lcy10g1106 337 PRINTS Expansin signature 73 87 IPR002963 GO:0009664(InterPro)
Lcy10g1106 337 PRINTS Expansin signature 113 123 IPR002963 GO:0009664(InterPro)
Lcy10g1106 337 PRINTS Expansin signature 132 149 IPR002963 GO:0009664(InterPro)
Lcy10g1106 337 PRINTS Expansin signature 149 162 IPR002963 GO:0009664(InterPro)
Lcy10g1106 337 PRINTS Expansin signature 100 111 IPR002963 GO:0009664(InterPro)
Lcy10g1106 337 Pfam Expansin C-terminal domain 244 321 IPR007117 -
Lcy10g1106 337 SMART dpbb_1 78 164 IPR007112 -
Lcy10g1106 337 Pfam Lytic transglycolase 79 164 IPR009009 -
Lcy10g1106 337 Gene3D - 27 169 IPR036908 -
Lcy10g1106 337 Gene3D - 246 335 IPR036749 -
Lcy10g1106 337 SUPERFAMILY Barwin-like endoglucanases 42 168 IPR036908 -
Lcy10g1106 337 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576(InterPro)
Lcy10g1106 337 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576(InterPro)
Lcy10g1106 337 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576(InterPro)
Lcy10g1106 337 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1106 Lcy-Chr10:33380233 Lcy1g1434 Lcy-Chr1:13900248 4.86E-78 dispersed
Lcy10g1106 Lcy-Chr10:33380233 Lcy8g1801 Lcy-Chr8:44424220 2.92E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1106 - - - 0.0