Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1110 AAAAAAAGAAAAGAAAAGGGACCACACAAAGAACCGCCAGTGCCCGAAGTAACCTTCGGATTTCCATTTTGTGAGGTCCCCAGCCTTCCAAGGCTGACCAAAATCACTCTATTTAAGCCCCCTTCTTCTTCATCCACCTCCATTGATCTTCTCATTCTTCTCTCTGCAACTTTCTTCTTCTTTTTCCGATCTCGATCCACTATGGTTCTGTCCAAGACTGCTTCTCAGACAGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATCCCTAAGGAGGCCGCGTTCCAGATCATCAACGATGAACTCATGCTCGATGGAAATCCTAGGCTGAATTTGGCCTCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGACAAACTCATAATGGCTGCCATTAACAAGAACTATGTGGATATGGATGAGTATCCTGTCACTACAGAGCTCCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGTGAGTCTGAGACGGCGGTGGGAGTTGGAACGGTGGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGCTTGCCCTATGACAAGCCCAACATTGTCACTGGAGCTAATGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGAAGGTTACTATGTGATGGATCCAGAGAAAGCTGTGGAATTGGTTGACGAGAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCGCTTAAATGATCTCTTGGTCGAAAAGAACAAGGAAACTGGATGGGACACTCCTATTCATGTTGATGCTGCGAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGATCTTGAGTGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTGAGTGGGCACAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTCATCTGGAGGAACAAGGAAGACTTGCCTGATGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAGCCCACTTTCACCCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATCGTCCTCAAGGAAGGACTCGAAAAGACAGGGCGCTTCAACATTGTGTCAAAGGACGATGGAGTTCCACTAGTGGCCTTCTCCTTGAAAGACAACACTCGCCACACAGAGTTTGAAGTCTCAGAAATGCTGAGGAGATTCGGCTGGATTGTGCCAGCTTACACCATGCCTCCAGATGCACAACACATTACAGTCCTAAGAGTGGTGATCCGAGAAGATTTCTCACGCACACTTGCTGAGCGTCTGGTGGCAGATATTGAGAAAGTGCTGCACGAGCTTGACAGCCTCCCGTCGAAGGCCGATATGAAGACAATGGTGGCTAGAGAAGAGGCACAGCACAACCCGAAGAAGAGCGCACTCGAGACGCAGAGGGAGATCACAACTGCTTGGAAGAAGTTTGTGATGGAAAAGAAGAAGACTAATGGAGTTTGTTAG 1689 47.42 KKRKEKGPHKEPPVPEVTFGFPFCEVPSLPRLTKITLFKPPSSSSTSIDLLILLSATFFFFFRSRSTMVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGLPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLEKTGRFNIVSKDDGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVADIEKVLHELDSLPSKADMKTMVAREEAQHNPKKSALETQREITTAWKKFVMEKKKTNGVC 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33453453 33461801 + Maker00008764 Lcy10g1110 644621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1110 562 PANTHER GLUTAMATE DECARBOXYLASE 68 562 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Lcy10g1110 562 FunFam Glutamate decarboxylase 428 515 - -
Lcy10g1110 562 NCBIfam glutamate decarboxylase 83 511 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Lcy10g1110 562 CDD DOPA_deC_like 126 506 - -
Lcy10g1110 562 Pfam Pyridoxal-dependent decarboxylase conserved domain 100 448 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Lcy10g1110 562 Gene3D - 68 132 - -
Lcy10g1110 562 FunFam Glutamate decarboxylase 133 427 - -
Lcy10g1110 562 FunFam Glutamate decarboxylase 68 132 - -
Lcy10g1110 562 Gene3D - 133 427 IPR015421 -
Lcy10g1110 562 Gene3D - 428 515 - -
Lcy10g1110 562 SUPERFAMILY PLP-dependent transferases 82 511 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1110 Lcy-Chr10:33453453 Lcy10g1573 Lcy-Chr10:40084878 2.53E-303 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1110 K01580 - csv:101216119 958.747