Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1113 ATGGCGCACCGGAATCCGCTCCGGATGTGTTTTTCATATGCGGTGTTTGTTGTTTTGATGTTCTTCCCTGCTGGAGAGGCGGACCTTGCATCCGACACGGCGGCGCTGGTGGCGCTTCAGAAGGCGATGGGCAGTCGGAGCCGGACTCGCCGCTGGAACCTCTCCGATCAGACTCCGTGTTTGTGGCTTGGCGTCACTTGCGGCGGTGGGAGGGTTACTGAACTCCGGCTTCCCGGCGTTGGACTCGTCGGTCAACTTCCTCTAGGGCTTGGAAATTTGACTCAACTGGAAACCCTGTCTCTTCGCTCTAACATGCTTTCCGGTTCTATTCCGTCGGATTTTGCTAACCTCCGCTCCCTCCGGAACCTCTACTTGCAACGGAACTCGTTTTCCGACGAGATTCCTCCGGTTCTGTTCAGTATTCAGAGTCTGGTTCGCCTGAATTTGGCGCATAACCAGTTCGTCGGTCAGATTTCATCTGGATTCAACAATCTCACGAACTTAGAGGTTCTGAATTTGGAAGGGAATCAACTCGCTGGAGTCATTCCTGATTTCAACATACCCTCGCTCAAAACCCTCAATGTTTCTTTCAATCGTCTCAACGGTTCAATCCCTACACAGTTTTCCGATCAGCCAGCCAGTGCCTTCGAAGGCAACTCGCTTTGCGGGAAGCCACTGAGCCCTTGCGACGGCGAGGGGAACAAATTATCAACCGGGGCAATCGCTGGAATTGTAATAGGAAGCTCAATTGCATTATTGATCATCGTTCTGATTTTGATCTTTCTGTGCCGAAAGACAATCAGGACCAATCGGCAGAGCGATGCTCAGACAACGACCTCCGGGAGGTTGTCGTCGGAGGTCGAGAATGGAGGTGGTGGAAATGGAGGAACTGGGAATGAGAGGAGTTTAGTGTTCTGTGGGAAAGGAGAAAGTGCTTTTGATTTGGAGGAACTGTTGAAAGCATCAGCAGAGGTGTTGGGGAAGGGAACTTGTGGGTCAACTTACAAGGTAGCTCTGGATATGGGGATGACTGTGGTGGTTAAGAGGTTGAAAGATGTCAAAGTTTCAAAGGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCTATTAATGCTTACTATTATGGCAGAGATGAGAAGCTTCTGCTTTGTGATTATGTCCCCATGGGAAGCTTATCTGTGCATTTACATGGCAACAAAGATCCTGGCAGGAGGACTCCATTGAAATGGGAAGCAAGGGCTGGCATTGCGCTTGCAGCCGCTCGTGGAATTTCGTATCTACATTCTCGACGACCTCCGACCTCCCATGGGAATATAAAGCCTTCGAACATTCTCCTCAACAGATCCCACGCAGCTTGTGTCTCTGACTTTGGCCTCATTCAGATTGCAAGCCAATCATCCACTCCAAACCATCTTGCAGCCTACCGTGCCCCTGAAGTCACTGATCCTCGAAAAGTATCCCTGAAAGCAGATGTTTACAGTTTTGGTATGGTAATGCTAGAGCTTCTATCAGGGAAGGCTCCGAACTCTCCAATGCTCAATGACGATGGCGTAGACCTCCCGCGATGGGTGCACTCGAAGATCGAAGAAAAGCAGACTGCAGAAGTGTTTGATGAGGAGCTGTTAGAATACAAGAATGGCTTGGATGAAATGGTTCAACTTCTGCATCTTGCCTTGTTGTGTACAGCTCCACACCCGGATAGTCGCCCTTCGATGGCGAAGGCGACGAGTCGAATCGATGAAATATATCAATCGATCTTACTGAAAGAACAAGAGGCGGGGAACGATAAGTTTTATGATGTGGACAGTTCTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGGTTCCACCTTCAATCTAG 1890 49.05 MAHRNPLRMCFSYAVFVVLMFFPAGEADLASDTAALVALQKAMGSRSRTRRWNLSDQTPCLWLGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRSLRNLYLQRNSFSDEIPPVLFSIQSLVRLNLAHNQFVGQISSGFNNLTNLEVLNLEGNQLAGVIPDFNIPSLKTLNVSFNRLNGSIPTQFSDQPASAFEGNSLCGKPLSPCDGEGNKLSTGAIAGIVIGSSIALLIIVLILIFLCRKTIRTNRQSDAQTTTSGRLSSEVENGGGGNGGTGNERSLVFCGKGESAFDLEELLKASAEVLGKGTCGSTYKVALDMGMTVVVKRLKDVKVSKEEFKEKIESLGMMNHQNLVPINAYYYGRDEKLLLCDYVPMGSLSVHLHGNKDPGRRTPLKWEARAGIALAAARGISYLHSRRPPTSHGNIKPSNILLNRSHAACVSDFGLIQIASQSSTPNHLAAYRAPEVTDPRKVSLKADVYSFGMVMLELLSGKAPNSPMLNDDGVDLPRWVHSKIEEKQTAEVFDEELLEYKNGLDEMVQLLHLALLCTAPHPDSRPSMAKATSRIDEIYQSILLKEQEAGNDKFYDVDSSVSQQFYSADSIMVPPSI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33488869 33491702 + Maker00008584 Lcy10g1113 644624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1113 629 Pfam Leucine Rich Repeat 189 209 IPR001611 GO:0005515(InterPro)
Lcy10g1113 629 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515(InterPro)
Lcy10g1113 629 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Lcy10g1113 629 Gene3D Phosphorylase Kinase; domain 1 297 394 - -
Lcy10g1113 629 Pfam Protein tyrosine and serine/threonine kinase 324 585 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1113 629 FunFam pollen receptor-like kinase 1 292 394 - -
Lcy10g1113 629 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Lcy10g1113 629 Pfam Leucine rich repeat 91 129 IPR001611 GO:0005515(InterPro)
Lcy10g1113 629 MobiDBLite consensus disorder prediction 273 298 - -
Lcy10g1113 629 SUPERFAMILY L domain-like 47 210 - -
Lcy10g1113 629 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 395 600 - -
Lcy10g1113 629 PANTHER OS05G0588300 PROTEIN 15 593 IPR050994 -
Lcy10g1113 629 SUPERFAMILY Protein kinase-like (PK-like) 324 584 IPR011009 -
Lcy10g1113 629 MobiDBLite consensus disorder prediction 273 296 - -
Lcy10g1113 629 ProSiteProfiles Protein kinase domain profile. 320 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1113 629 Gene3D Ribonuclease Inhibitor 142 229 IPR032675 -
Lcy10g1113 629 FunFam Probable inactive receptor kinase RLK902 29 186 - -
Lcy10g1113 629 Gene3D Ribonuclease Inhibitor 31 141 IPR032675 -
Lcy10g1113 629 SMART LRR_typ_2 117 141 IPR003591 -
Lcy10g1113 629 SMART LRR_typ_2 93 116 IPR003591 -
Lcy10g1113 629 SMART LRR_typ_2 165 187 IPR003591 -
Lcy10g1113 629 Gene3D Transferase(Phosphotransferase) domain 1 395 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1113 Lcy-Chr10:33488869 Lcy5g2369 Lcy-Chr5:46513497 1.76E-151 dispersed
Lcy10g1113 Lcy-Chr10:33488869 Lcy12g0196 Lcy-Chr12:2415569 3.59E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65375 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1113 - - - 0.0