Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1115 ATGGACAAGAACAACAACCAACCTGAGAATCAACAACACCTCCTTCACAAGGCCTCTAGCTTCACCGCCAAGGACGACGCCCCCGCTGATGATAATGCCACTCTCGCCGCTCCAGATCCTGCTGCTTCCCTTGCGGATGCCGACGCCGATGTGAAATCTGCCGAGAAATTATTGGAGGATCAGGATCGGGATCAGAAGGAGGAGATCAAGGAGGAGGACGAAAAGAAGGAGCAGGAGCAGGAGGAGGAAAAGAAAGAGGAGGAAAAGAAGGAGGAGGAGGAGGAGGAAAAGAAGGAGCAGGAGGCGGCCGAAGACTCCAAGGATGAACCGGATCTTCATTATAATCTCCACACCATTCTTCCAGATGTCGATCAATTCCTGCTAGCTCCTCACGGTTCTCGCGATCGAGAGGAGGATTCCGCTGTCGAGATTCCGAAGTTCATCGACAAGTTCATGGATCTCCTGGATGCGAAGATCGAGCAATACAACAGTGCGGAATCGGATGCCAAGGAGAAAGACTGTCGAGTGCCGGAGGACGAATCGTCGTTTCTGGAAGCGGTTGATCGGATATCGAAGCTGAAGAATGCAGTGCACGATATGAAATTGGAAGACAAGAATAATTCCTTGATCAATCGCATTGGAAGCACTCAACAGCAAGCAATTTCTTATTTGGAAGAAGAGTTCAGGTTCTTTCTCGAGGAATCCAGAGATGGCGATACGGATCCTGCTGCCGATACGAAAGGGAAACACGAACCGGATCGCTGTGCAGTAGCACCGGACGCTGATTCCGATCAAGTCCATTTTCCAGGTTACTCCGACGAGATCGTGAGCTATTTGAACAAAATCGCCAACCAAATGATATCCGGTGGATACGAATCGGAATGTTGCCAAGTTTACATCGTCGCCAGAAGAAACATATTCGAAGAGGCCTTGCAGAAGCTCGGATTCGAGAAACACAGCATCGATGATATCCAGAAGATGAATTGGGAAGCAATGGAGAGGGAGATCGCTACATGGACCAAAACCATCAAGCAATGCGCCACCGTTTTGTTCTCCGGCGAACGGACTCTCGCCGAATCTGTATTTTCTGCGTATCCTCCAATTTCCGCCAGTCTGTTTAGCAACCTTACTCGCGGCATTGTGATTCAACTGTTAAATTTCTCTGAAGGAGTTGCAATGACGAAACGCTCCGCCGAAAAATTGTTCAAGCTTCTTGATATGTACGAAGCTCTTCGCGATATGGTCCCAAAAATGGAAAGCTTATATCCAGAAGAATCCGCCAACGAGCTCAAAACAGAGACCACAACCGCTAGAACTCGTCTCGGCGAAGCGGCGATTTGCATATTCTGCGATCTCGAAAACTCGATCAAATCGGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTTCATCCATTGACTCGATACACCTTAAACTACTTGAAATACGCTTGCGAGTACAGAACCACACTGGAACAGATTTTCAAAGAACACTCAAAAATCGAGCGAGCCGATTCCACAAGCCGACCACATTTCGAAGGCGAACAACCACCACCGAGTTACAACCCTAGCGCTGACAATCAATCACCATTCTCCGTGGAACTGACGAAGGTGATGGAGCTCCTGGACTCAAATCTGGAAGCAAAATCAAAGCTATACAGAGACATACCACTGAGTTCAATCTTCATGATGAACAACGGCCGATACATCTTGCAGAAGATCAAGGGATCTGCAGATATTCACGAACTGGTCGGCGATGCGTGGTACAGAAAGAGATCTTCCGATCTCCGTCAGTACCACAAGAGTTACCAGAGAGAGACGTGGGGCAGATTGTTGGGTTGTTTGAACCACGAGGGACTGACGGTGCACGGGAAAGTGGTAAAGCCAGTGCTGAAGGAGAGGTTTAAGGGATTCAACGCCCTGTTCGAAGAGATTCACAAAACACAGAGCTCGTGGGTCATCAGTGACGAGCAGCTTCAATCGGAGCTCCGAGTTTCGATATCGGCGGTGATGATTCCGGCGTACAGATCATTCCTAGGGAGGTTCTCGCAGTACTTGGATCCGGGGAGACAGACAGAGAAATACATTAAGTTTCAGCCTGAAGACATAGAAACCTACATAGATGATCTATTCGATGGAAACCCAACCTCCATGGCAAGAAGGAGAACATAA 2172 48.76 MDKNNNQPENQQHLLHKASSFTAKDDAPADDNATLAAPDPAASLADADADVKSAEKLLEDQDRDQKEEIKEEDEKKEQEQEEEKKEEEKKEEEEEEKKEQEAAEDSKDEPDLHYNLHTILPDVDQFLLAPHGSRDREEDSAVEIPKFIDKFMDLLDAKIEQYNSAESDAKEKDCRVPEDESSFLEAVDRISKLKNAVHDMKLEDKNNSLINRIGSTQQQAISYLEEEFRFFLEESRDGDTDPAADTKGKHEPDRCAVAPDADSDQVHFPGYSDEIVSYLNKIANQMISGGYESECCQVYIVARRNIFEEALQKLGFEKHSIDDIQKMNWEAMEREIATWTKTIKQCATVLFSGERTLAESVFSAYPPISASLFSNLTRGIVIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMESLYPEESANELKTETTTARTRLGEAAICIFCDLENSIKSDTGKTPVPGGAVHPLTRYTLNYLKYACEYRTTLEQIFKEHSKIERADSTSRPHFEGEQPPPSYNPSADNQSPFSVELTKVMELLDSNLEAKSKLYRDIPLSSIFMMNNGRYILQKIKGSADIHELVGDAWYRKRSSDLRQYHKSYQRETWGRLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWVISDEQLQSELRVSISAVMIPAYRSFLGRFSQYLDPGRQTEKYIKFQPEDIETYIDDLFDGNPTSMARRRT 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33504180 33506351 - Maker00008325 Lcy10g1115 644626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1115 723 MobiDBLite consensus disorder prediction 1 117 - -
Lcy10g1115 723 Gene3D Exocyst complex component Exo70 131 721 - -
Lcy10g1115 723 SUPERFAMILY Cullin repeat-like 178 712 IPR016159 -
Lcy10g1115 723 Coils Coil 44 109 - -
Lcy10g1115 723 Pfam Exocyst complex component Exo70 N-terminal 152 233 - -
Lcy10g1115 723 PANTHER EXOCYST COMPLEX PROTEIN EXO70 91 714 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy10g1115 723 FunFam Exocyst subunit Exo70 family protein 166 719 - -
Lcy10g1115 723 MobiDBLite consensus disorder prediction 501 528 - -
Lcy10g1115 723 Pfam Exo70 exocyst complex subunit C-terminal 338 709 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy10g1115 723 MobiDBLite consensus disorder prediction 49 115 - -
Lcy10g1115 723 MobiDBLite consensus disorder prediction 1 18 - -
Lcy10g1115 723 MobiDBLite consensus disorder prediction 235 254 - -
Lcy10g1115 723 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1115 Lcy-Chr10:33504180 Lcy11g1075 Lcy-Chr11:32426632 3.00E-204 dispersed
Lcy10g1115 Lcy-Chr10:33504180 Lcy2g0063 Lcy-Chr2:462483 2.03E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1115 K07195 - csv:101206040 1123.23