Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1141 ATGGACGAAGGGGGCAACCAGATGGTTTGCGGAATGGAGAAGGAAGAAGACTGTTTTGGAAAAACTACAGGTAACCACCTGGGGTGCAAAACGAAGGAAGAAGTTAAGAAAAAGCTCATGGACCCCAACCATGAGAAGGAAAGCATAGGAAAACTCATGGAAATAGATGAGGCAAGCCAGAAAAGTAAGGAAGACCAACAGGGGAAAAGAAACTACAACCAGAGGAAAGAAGCAGAAGCGGAGACAAGCAATATGGCTCAGGAAAAAGGGAAACAAAAAGTTCGGGACAACGAGGAGGAAGATCTTCTTAGCCAAATTGAAAAACTAAAAATTGAGGAAGGAAAGAGAATAGTAGAAGTGGAAGATGATGACATCGAAGATTTGGACAAAAAATTTAGGAGCTCGATAATATGCAAGATACTCACGACAAAGGCAATAAGCCCAGAAGCTTTCTCATACTTTATGCCTAGAATATGGGGAGTAGAAGGATGGGTTAAAATAGAAAAAGCTGGAAACAATGTATACCTATGCAATTTCAGAAGGATAAAGGATAAAGTGAGAATCACAAGAGGCGGACCATGGTCTTATGACGATGCAATACTGATCATTGAAGAACCAAAAGGGAGTATCAGTGTCGAAAAACTCGAATTTAAACATGTATCTTTTTGGATCCATTTTCATAAACTCCCACGTGTGTGTTTTTGCAGGAAATATGCAATAGCTCTGGGAAACTCCATAGGAGAATTTGTAGCAGCTGAATCAGATGAAAATGGAAAAATGGAAGGAGAAACACTAAGGGTAAAGGTCAAAGTTAATGTGGAGGAGCCTTTAAAAAGAGGAACAAATGTCAAAATAGGGTCAAAGGCAGGAAAAACGTGGATTCAAATCACGTATGAAAAGCTTCCTGATTTCTGTTATTTTTGCGGGAAGTTAGGGCATGTCTTTCAAGAGTGTGGCGAAGAGGGAGCTGAGAAATCAAATGAACAACCTTTCGGGGTAGAAATGCGGGAAACAAAGGGTAGCAAAGGAATATATAAAACTTGGAATCCTGATAGCAGAAGCTATCCAAATTTTCAGAGAGGAAGGGGCAGGGAAGGTCGTGGAAGATGGGGAAAAAGTTCAAGAGAGGAGTACAGAAATTTCAAAAATAGTTCTGAGGAAGGAGAGAATGAAAAAAGCCAAAAGAACAGAGAGCACCAAAAAAAAGACATAAACCAAAAAAGATGGAGAAACGATGAGGCAGATAGACAGGGCATGGGCGTAGAAGGAAGTCAGAATAAACCACCGGAAAACACAGGAACGACGAGCATGGCCGAAATCCGAGAAGATAGGAGGCCGCCGGAGGAAAGACCAGAATCGGAAAGTGACGTAATTGGTGCCGGAACTGTGGGAACGGTGGCACAACTCCCAAAAGCAATGATGAAGACCCAAACGGTTACTAATGTTGAAAAGGAGGAAAATGACAAAATGGTTGAGGAAAAGAGGGGAAAAGGTGTGCAGACCAGCCACAAAAGAAAGGAAAGTCACGTGAGGGACTTTGTAAAAAACTCAAAGAAAGGAAAAAGTAAAGCAGAAAGGTTTAAAGGAAAAAGCCCAGAAAATAGCCCATGCTGGTCAATAGGAAACAACCCAAAGACAAAGGACTTAGCCATCAAAGCTGGTCACTATGGGCTGTCAAATTACCCAGACATGGATGCAAATTTGGGAATACAAGAAAAAGAAGAGACCATGGATATAGACGGCAAGGTCAACAAGAGGACTATGCAAATAATATCAGAGCAGACACAAGAGACAACTCAACCAGAAAGAAGAATAGGAAAGTCAAGGAAAAGAAGAGCGAGAGAAGGGAAGCCTGATACGGAACAGGAAAGAGAAGAAACTAAAACAGGAAAAACAGGGAAACATGAAGAGACCAACATGAGGAGCAATACCAGTTTTGCTGCAGCATGCTGGTTCCACATCAGAAGGCAGAAGGTCTGGGAAAATCACTTTGCACAAGGCAACATGGATGCAGGTTACAATGGCGATCAATTCACGTGGGCAAGAAACAAAAGAGATCCCAACTCAGTCAAGGAGAGAAACATTCTCCAAAGGAAGTGGACTGAAGGCAGACTTATATCAAGCAAAGATCTTGATACAAAAATCCAAGACAGCATTGAAGGTTTAAGTAAGTGGAACCGAGAGAGACTCAAAGGAAAAACAGTGAGTGCTATTATTGATGAGAATAACAAGTGGAGAGAAGACCTTATATCTCATACTTTTGATCCTCAAGACAAGGAAGACATTCTAAGCATCCCTTTGGGATCAAAGAATTCTAAAGATGAGATAATATGGGGGAAAGATAAAAGGGGCCTTTTTTCAGTCAAGAGTGCATATCGATTGGCAAAAGACCTGAATAACATCAATGAAGCCTCAGCATCAAACCAGAACCTATCTTCGAATCTTTGGAGGAGCCTTTGGAAAACAGAAGCAATCCCAAGAGCAAAAGCTTGCGCGTGGAAAATTATCAATGATATTGTGCCAAACAAAGCAAACATTAAAAAAAGGGGGATAGACTTAAACTCTTCTTGCTCTCTCTGTGGAAAAAAAGAAGAAACATCCAGCCATCTCTTTTGGGAGTGCAAATCCTCAAAAAGAGTTTGGCTTGACATAATCCCTAATTCTCTAATTATGTTTGGTTTGTGCAAGGCAAATTGGACTCCAATGGACTATTGGCAATGGATGGTAGAAAATGGAACCAACGAAGATCATAGCAAAGTGGTGATAACGTTATGGAGCATCTGGAATGCGAGGAATAAAATAATTAACCAGCAAATCTCTCCAGACAATAAACGATTATCATCCCAAATTCAAGATGCAATCACAGAGCAATTAAAGAGAAATACCTCTTGGGCTGATCGAGAAAAGAAGGAGAAATCTGGGAACCCCCTGAATCATGAAGATTGTTGGGTTGTCCGTGATTCAAGTGGATCCCCGATAGCTGCTGGCCTGAAAAAGATCGAGAGGAGGATGGAAATTAAATCCATGGAAGCTGCGGCTATTTGGGAAGGATTGAGGAAAGTAAACCATCTTTTCAAGCAAAATCGTCCTCCCCTGATTGTCGAAGCGGATGCCCTGGAAGTGATCAACATTTTGCAAGGGAAGATGGAAGATTTCTCGGAGACAAAGAACATAGTAGACGACATTTCTTCCCTCAGCAAGGAGATGGGCAGAATCGAATTTCAACACTGCCCCAGAACCCAAAATACAGTAGCCCACTGTGCCTCTCGCTTTGCTGCGAGTTTTTTTGTTTCGCGGGACCAGAGTCTCTTCCCCTCGCGGGAAGAAGATTGTATTTTTTGGAATTCTGGCTTCCCCCCTTGGAGGAACTCATCTGACCTTCACGTGCCACCAACAGTAAATTTGTATGAGAGGGGGGAAGACGTGACCTACAAAACAGTAAACCTGCACACTGGTGTGGTTCTTGTCACACCGCGATGCTTAAGTCAGAAAGCTGAAGGAGGAGAGCAAAAGAGCAAAGTGTTCGAAGGCGATCCAGGGCGACCAGGGGCAGTAGGTACCGATCGGAGGCAGAAGGAATCGGCCCATGCAAGTGGGTCGAGTGGTTGGCCTCGGCCTCATGCCGACCATATGGGCCGGGCAAAGGCCCGGTCCCTCCGACCTTGGCCCGACCTTTTGGCCCGTTTTGTCTCTGGAGTCCATTTTTCGGTCCTACTTCTGGACTCGTGTCGGGTTGTCCTCGTCAGCTCTTTGTACATTAGAGTGATGAAGAGGGAGCTTGAGGATGATGGATCTACGCCTGCTGCTGCTGCTTTCTATGGCGGCGGCGGGCGGGCGGTTGTCAAAGGGGAGTGTTCTTCAATGTCGTCTGGGAAGCTTAAGATGTGGGAGGAGGAGCAGGACGGCGGCGGTGGGATGGATGAGTTGCTTGCTGTTTTGGGTTACAAGGTTCGGGCGTCCGACATGGCGGATGTGGCCGAGAAGCTCGAGCAGTTGGAGATGGTCATGGGAACTGCTCACGAAGATGGGATTTCTCAGCTGGCTTCTGATACTGTTCATTACAATCCTTCTGATCTATCTGCTTGGGTTCAAAATATGCTCTCTGAATTCAATCATTCCCCCAACCATTTCGCCTCTGCCCCCCAACCTTCTCAATATTCCAATTCTTCTCACTCGCGGATTCAATCCACATCTTCGCGGTTGTACGACGACGATTCTGAGTACGATCTGAGCGCCATTCCTGGCGATGCGGTTTTGCCTCCCAAACACTCCTCCACGGAAATCGAAACTAATTCTCGTAAGCGATTGAAAATTGGAGGAGAGAGTTCGGTGAATTTGTTACCGTCCTCGTCCTCGCCGCCATTCGTTGTTACCACCGCCGGGATTGTCTCTGAACCGTCTCGCCCAGTGGTGGTTGTCGAGGAGGTCTCGCAAGAGACAGGGATTCAACTCGTTCACACTCTAATGGCCTGCGCCGAGGCGGTTCAGCAAGAGAATATGAAGCTCGCCGGTGCCTTGGTGAAGCACATCGAATTGCTGGCGGCGTCGCAAGCCGGAGCGATGAGGAAAGTTGCGACGTATTTCGCCCAAGCCCTAGCTCGTCGGATTTACAGAATCTACTCTCCTCAAGACGGGCTCTACTCCGATCCTCTCCAGATGCACTTCTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCCATTCTCGAAGCATTCGCGACGGCGCCGAGGGTTCATGTTATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTGATGCAGGCTCTCGCATTACGCCCAGGAGGTCCGCCAGCTTTCCGATTGACCGGAATCGGCCCGCCGCGGCCGGATAATACGGCCGATTCCTTGCAGCAAGTCGGTTGGAAGTTAGCGCAGGTGGCGGAGGCCATTGGAGTCGAGTTTGATTTCAATCACATCGTGTGTGGTAATCTGGCGGATCTCGATCCGGCGGCTCTGGAGATTCGGCCGGCGGCGGTGGAGGCGGTGGCGGTGAACTCGGTGTTCGATCTGCACCGATTGCTGGCTCGGCCTGGAGCGATCGAGAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATTGTGACGATTGTGGAACAGGAAGCGAACCACAACGGGCCGGTTTTCCTCGACCGGTTTACTGAGGCCTTGCATTATTACTCGAACCTGTTTGATTCCCTCGAGGGGTCTTCGGCCGGGTTCGAACCGGCAAATGAGGACGTGTTTTTGTCGGAGGTTTATTTGGGGAGGCAGATATGGAATGTGGTGGCTTGTGAAGGAACGGACCGAGTCGAGCGTCACGAGTCATTGACTCAGTGGCGAACTCGGATGGAATCGGCTGGGTTCGACCCGGTTCATCTCGGTTCGAACGCATTTAAGCAGGCTAGTATGCTTTTGGCCCTCTTTGCTGGCGGCGAAGGGTACAGGGTGGAGGAGAATAATGGGTGTTTGATGCTTGGCTGGCACACTCGACCGTTGATCGCCACGTCAGCTTGGCAGCTCACTGCCGATGAGTCGAAGTGA 5565 46.92 MDEGGNQMVCGMEKEEDCFGKTTGNHLGCKTKEEVKKKLMDPNHEKESIGKLMEIDEASQKSKEDQQGKRNYNQRKEAEAETSNMAQEKGKQKVRDNEEEDLLSQIEKLKIEEGKRIVEVEDDDIEDLDKKFRSSIICKILTTKAISPEAFSYFMPRIWGVEGWVKIEKAGNNVYLCNFRRIKDKVRITRGGPWSYDDAILIIEEPKGSISVEKLEFKHVSFWIHFHKLPRVCFCRKYAIALGNSIGEFVAAESDENGKMEGETLRVKVKVNVEEPLKRGTNVKIGSKAGKTWIQITYEKLPDFCYFCGKLGHVFQECGEEGAEKSNEQPFGVEMRETKGSKGIYKTWNPDSRSYPNFQRGRGREGRGRWGKSSREEYRNFKNSSEEGENEKSQKNREHQKKDINQKRWRNDEADRQGMGVEGSQNKPPENTGTTSMAEIREDRRPPEERPESESDVIGAGTVGTVAQLPKAMMKTQTVTNVEKEENDKMVEEKRGKGVQTSHKRKESHVRDFVKNSKKGKSKAERFKGKSPENSPCWSIGNNPKTKDLAIKAGHYGLSNYPDMDANLGIQEKEETMDIDGKVNKRTMQIISEQTQETTQPERRIGKSRKRRAREGKPDTEQEREETKTGKTGKHEETNMRSNTSFAAACWFHIRRQKVWENHFAQGNMDAGYNGDQFTWARNKRDPNSVKERNILQRKWTEGRLISSKDLDTKIQDSIEGLSKWNRERLKGKTVSAIIDENNKWREDLISHTFDPQDKEDILSIPLGSKNSKDEIIWGKDKRGLFSVKSAYRLAKDLNNINEASASNQNLSSNLWRSLWKTEAIPRAKACAWKIINDIVPNKANIKKRGIDLNSSCSLCGKKEETSSHLFWECKSSKRVWLDIIPNSLIMFGLCKANWTPMDYWQWMVENGTNEDHSKVVITLWSIWNARNKIINQQISPDNKRLSSQIQDAITEQLKRNTSWADREKKEKSGNPLNHEDCWVVRDSSGSPIAAGLKKIERRMEIKSMEAAAIWEGLRKVNHLFKQNRPPLIVEADALEVINILQGKMEDFSETKNIVDDISSLSKEMGRIEFQHCPRTQNTVAHCASRFAASFFVSRDQSLFPSREEDCIFWNSGFPPWRNSSDLHVPPTVNLYERGEDVTYKTVNLHTGVVLVTPRCLSQKAEGGEQKSKVFEGDPGRPGAVGTDRRQKESAHASGSSGWPRPHADHMGRAKARSLRPWPDLLARFVSGVHFSVLLLDSCRVVLVSSLYIRVMKRELEDDGSTPAAAAFYGGGGRAVVKGECSSMSSGKLKMWEEEQDGGGGMDELLAVLGYKVRASDMADVAEKLEQLEMVMGTAHEDGISQLASDTVHYNPSDLSAWVQNMLSEFNHSPNHFASAPQPSQYSNSSHSRIQSTSSRLYDDDSEYDLSAIPGDAVLPPKHSSTEIETNSRKRLKIGGESSVNLLPSSSSPPFVVTTAGIVSEPSRPVVVVEEVSQETGIQLVHTLMACAEAVQQENMKLAGALVKHIELLAASQAGAMRKVATYFAQALARRIYRIYSPQDGLYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAPRVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPRPDNTADSLQQVGWKLAQVAEAIGVEFDFNHIVCGNLADLDPAALEIRPAAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSAGFEPANEDVFLSEVYLGRQIWNVVACEGTDRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLTADESK 1854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33820476 33832404 + Maker00008520 Lcy10g1141 644652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1141 1854 Pfam Domain of unknown function (DUF4283) 152 269 IPR025558 -
Lcy10g1141 1854 ProSiteProfiles Zinc finger CCHC-type profile. 305 318 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 486 541 - -
Lcy10g1141 1854 Pfam Reverse transcriptase-like 983 1091 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy10g1141 1854 Gene3D - 1305 1370 IPR038088 -
Lcy10g1141 1854 FunFam DELLA protein GAI 1305 1370 - -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 35 99 - -
Lcy10g1141 1854 Pfam zinc-binding in reverse transcriptase 786 881 IPR026960 -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 612 638 - -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 437 455 - -
Lcy10g1141 1854 SMART DELLA_2 1307 1380 - -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 590 638 - -
Lcy10g1141 1854 Pfam Zinc knuckle 272 318 IPR025836 -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 358 417 - -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 1373 1401 - -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 323 462 - -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 1373 1397 - -
Lcy10g1141 1854 ProSiteProfiles GRAS family profile. 1475 1847 IPR005202 -
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 1167 1215 - -
Lcy10g1141 1854 CDD RNase_H_like 982 1090 IPR044730 -
Lcy10g1141 1854 Pfam GRAS domain family 1484 1847 IPR005202 -
Lcy10g1141 1854 Gene3D - 972 1095 IPR036397 GO:0003676(InterPro)
Lcy10g1141 1854 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1440 1846 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Lcy10g1141 1854 MobiDBLite consensus disorder prediction 486 530 - -
Lcy10g1141 1854 Pfam Transcriptional regulator DELLA protein N terminal 1307 1374 IPR021914 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1141 Lcy-Chr10:33820476 Lcy10g1389 Lcy-Chr10:37256932 1.49E-223 dispersed
Lcy1g2107 Lcy-Chr1:28784076 Lcy10g1141 Lcy-Chr10:33820476 5.86E-28 dispersed
Lcy3g1276 Lcy-Chr3:38631518 Lcy10g1141 Lcy-Chr10:33820476 4.39E-21 dispersed
Lcy6g0712 Lcy-Chr6:6913627 Lcy10g1141 Lcy-Chr10:33820476 6.51E-17 dispersed
Lcy6g1910 Lcy-Chr6:40069776 Lcy10g1141 Lcy-Chr10:33820476 9.43E-57 dispersed
Lcy6g1962 Lcy-Chr6:41590795 Lcy10g1141 Lcy-Chr10:33820476 1.03E-48 dispersed
Lcy10g1141 Lcy-Chr10:33820476 Lcy12g0184 Lcy-Chr12:2247346 1.99E-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18973 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1141 K14494 - csv:101213911 938.717