Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g1145 | ATGGCACTTGCAAATTCAGCAGTACAAGAAGTCGATGGCATGGAGAAAGCTGGTGGATATATGAAGACTTTAGCCATTGGAAGCCATGAGAATCCAAATGTAAACTTTGTGTTTCGAAACACGACTAATTACCAACTCGATCAGCAGCATCAGCAACAGCAAATGTCTCAGTCTTTGATCAACTTCAAGTGTGGGATTGAAAATCTTTTCCACAAGAACAATAATGAGTCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAAGACACTTACAATTGGGATCAGCAGCGTCTGATGGAAGATCCCAATTGCTTTCAAACAGCTACCAACAATTACAGCCCTGCAAAAGAGAACAAAAATGGAGATGGGTCTGTGTATGAGTGGCTTTATTCTGAACCTACTGCGGTTTCTGATGGCATTCAAGAGGCTGAACCTGCTCAGGAGATTGGAAATTATAAGCGACCCCATATGGGAGAGAGCAGTGGGGGTGTTTGTAAGAAGCAATGCACAGCTACAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCGGTTCAAGGAGGGAAAGCGCCTGATATTTCCCAAGTTAAGGAAGCCATTGATGCCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGCTCAAACAGTGAAAAGTGA | 840 | 43.33 | MALANSAVQEVDGMEKAGGYMKTLAIGSHENPNVNFVFRNTTNYQLDQQHQQQQMSQSLINFKCGIENLFHKNNNESLLSFEPQGVCQDTYNWDQQRLMEDPNCFQTATNNYSPAKENKNGDGSVYEWLYSEPTAVSDGIQEAEPAQEIGNYKRPHMGESSGGVCKKQCTATAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSSNSEK | 279 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33871325 | 33875246 | - | Maker00008420 | Lcy10g1145 | 644656 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g1145 | 279 | CDD | bHLH_AtIND_like | 183 | 245 | - | - | |
| Lcy10g1145 | 279 | MobiDBLite | consensus disorder prediction | 174 | 188 | - | - | |
| Lcy10g1145 | 279 | Gene3D | - | 175 | 239 | IPR036638 | GO:0046983(InterPro) | |
| Lcy10g1145 | 279 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 180 | 241 | IPR036638 | GO:0046983(InterPro) | |
| Lcy10g1145 | 279 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 182 | 231 | IPR011598 | GO:0046983(InterPro) | |
| Lcy10g1145 | 279 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 43 | 249 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy10g1145 | 279 | SMART | finulus | 188 | 237 | IPR011598 | GO:0046983(InterPro) | |
| Lcy10g1145 | 279 | Pfam | Helix-loop-helix DNA-binding domain | 190 | 232 | IPR011598 | GO:0046983(InterPro) | |
| Lcy10g1145 | 279 | MobiDBLite | consensus disorder prediction | 156 | 195 | - | - | |
| Lcy10g1145 | 279 | FunFam | Transcription factor bHLH83 | 180 | 239 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1145 | Lcy-Chr10:33871325 | Lcy9g2042 | Lcy-Chr9:45292387 | 8.76E-21 | dispersed | |
| Lcy10g1145 | Lcy-Chr10:33871325 | Lcy6g0477 | Lcy-Chr6:4499006 | 3.40E-21 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18974 | None | None | None | None | Lcy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g1145 | - | - | - | 0.0 |