Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1169 ATGGGTTCTTTGCCTTCTGAGACTTTGGCCGTCGAAATGGTCGACACCCATGTTCTTGCCGGCGCCGGTGCCGGTGCCAGAACTGAGACCACTGAGTGGCTTCTCAATTCTCCCAACCCTCCAACTATTTGGGAAGAAATTGTCGGCGCTGTCAAAGAAAATGTCATTCCTCGAAGTTGCTCGAAGACTTCCATGGCAAAGAAGAAGAAGAAGAAAAGCACTTCTTCCAGCTCTGAAAAACAGAGCATTTTCAAAACCACTTTTTTTCTCCTGCAGCGCGTGTTCCCAATCCTCAGATTGGGCAGAGATTACAAAGCTACGAAGTTCAAAAGCGACCTCATGGCTGGTTTGACTCTCGCCAGTCTCAGCATCCCTCAGAGTATTGGGTATGCTAATTTGGCAAAGCTTGATCCTCAGTTTGGTCTCTATACAAGTGCTGTTCCTCCTTTGATCTATGCGTTAATGGGGAGCTCGAGAGAGATAGCCATTGGCCCAGTGGCTGTGGTTTCACTGCTTCTGTCATCAATGCTTCAAGAAATTCAAGATCCTGTTGCCTATAGAAGGCTTGTTTTCACTGTCACCTTCTTTGCAGGGACTTTTCAAGCTGCATTTGGACTTTTGAGATTGGGGTTTCTTGTGGATTTTCTTTCTCATGCTGCCATTGTTGGGTTCATGGCTGGTGCAGCCATTCTCATTGGTCTTCAGCAAATGAAAGGTCTGCTTGCCATTAGCAACTTCACCACCAAAACTGATGTGGTCTCTGTTTTGGAATCTGTTGTGAGATCTGTCCACCAGCCTTGGTACCCTTTGAACATTGTACTTGGCTGCTCATTTCTGATCTTCCTCCTTGTGGCCAGGTTCATTGGCAGAAGGAATAAGAAGTTGTTCTGGGTGTCAGCCATTGCTCCTCTCATATCTGTTATTCTCTCCACTTTGATAGTGTTTGTGTCAAGAGCTGACAGACATGGAGTTAAGATTGTGAAGGAAGTTAAAGAAGGTCTGAATCCAATCTCCATTCATCAGCTGCAATTGAACAGCTCAACTTTTGGCTTAGCTGCCAAAGTTGGCCTCATTGCTGCCCTTATAGCTCTCACAGAAGCGATCGCGGTAGGCCGATCCTTCGCCTCCATTAAAGGCTACAACATTGATGGGAACAAGGAGATGATTGCCATGGGCTTCATGAACATAATAGGATCTCTAACCTCTTGCTACTTAGCCACTGGGTCATTCTCAAGAACTGCTGTGAATTTTAGTGCTGGGTGTGAGAGTGTATTGTCAAATATAGTGATGGCAATAACAGTGATGCTGATACTGCAATTTTTGACTCGGTTTCTCTACTTCACTCCAATGGCCATTTTGGCTTCAATCATTCTCTCTGCTCTTCCTGGTCTCATTGACATCAATGAAGCTTTGCATATCTGGAAGGTTGACAAGCTTGACTTTCTTGCCTGTCTTGGCGCTTTCCTTGGTGTCTTGTTTCATTCTGTGGAATTTGGCCTTCTTCTGGCGGTTGGAATTTCATTTGCAAAGATATTGTTGATTTCAATCAGACCAGCCACAGAGGAGGTGGGAAGGCTTCCAAGAAGTGACATGTTTTGCAATATGAAGCAATTCCCCATGGCCATGAAAACTCAAGGAATCTCCATTATCAGAATAAACTCTGGCTTGCTTTGTTTTGCCAATGCCAGTTTCATCAGAGACAGGATAATGAAATTGGTAGAAGAAGATGAAGAAGATGGTGATATTGAAGAAACACCAAAAGAGCAACCTAAACAAGTGGTTGTTGACATGTGCAATGTTATGAATGTCGACACATCAGGAATCATTATTCTAGAGGAACTTCACAGACGGTTGTTGTTGCGCGGCATACAACTTACAATAGCCAGTCCAAAATGGGAAGTGATCCACAAACTTAAAAAGACCAATTTTTTTGAGAGAATTGAAGGAAGAGTTTTCCTATCAGTTGGTGAAGCTGTGGATTCATGCCTTGGAAATGCTTCCAAATTGCCTTCTCCTTACCAAAGTCATTGA 2031 43.97 MGSLPSETLAVEMVDTHVLAGAGAGARTETTEWLLNSPNPPTIWEEIVGAVKENVIPRSCSKTSMAKKKKKKSTSSSSEKQSIFKTTFFLLQRVFPILRLGRDYKATKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSAVPPLIYALMGSSREIAIGPVAVVSLLLSSMLQEIQDPVAYRRLVFTVTFFAGTFQAAFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAISNFTTKTDVVSVLESVVRSVHQPWYPLNIVLGCSFLIFLLVARFIGRRNKKLFWVSAIAPLISVILSTLIVFVSRADRHGVKIVKEVKEGLNPISIHQLQLNSSTFGLAAKVGLIAALIALTEAIAVGRSFASIKGYNIDGNKEMIAMGFMNIIGSLTSCYLATGSFSRTAVNFSAGCESVLSNIVMAITVMLILQFLTRFLYFTPMAILASIILSALPGLIDINEALHIWKVDKLDFLACLGAFLGVLFHSVEFGLLLAVGISFAKILLISIRPATEEVGRLPRSDMFCNMKQFPMAMKTQGISIIRINSGLLCFANASFIRDRIMKLVEEDEEDGDIEETPKEQPKQVVVDMCNVMNVDTSGIIILEELHRRLLLRGIQLTIASPKWEVIHKLKKTNFFERIEGRVFLSVGEAVDSCLGNASKLPSPYQSH 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34229942 34235590 - Maker00008388 Lcy10g1169 644680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1169 676 CDD STAS_SulP_like_sulfate_transporter 538 653 - -
Lcy10g1169 676 Pfam STAS domain 540 658 IPR002645 -
Lcy10g1169 676 ProSiteProfiles STAS domain profile. 554 662 IPR002645 -
Lcy10g1169 676 SUPERFAMILY SpoIIaa-like 544 662 IPR036513 -
Lcy10g1169 676 PANTHER SULFATE TRANSPORTER 66 663 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1169 676 NCBIfam sulfate permease 96 655 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1169 676 Pfam Sulfate permease family 109 485 IPR011547 GO:0016020(InterPro)
Lcy10g1169 676 ProSitePatterns SLC26A transporters signature. 138 159 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lcy10g1169 676 Gene3D STAS domain 517 665 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1169 Lcy-Chr10:34229942 Lcy4g0268 Lcy-Chr4:3241751 1.25E-188 dispersed
Lcy10g1169 Lcy-Chr10:34229942 Lcy10g1170 Lcy-Chr10:34269769 8.18E-90 tandem
Lcy6g0988 Lcy-Chr6:10435839 Lcy10g1169 Lcy-Chr10:34229942 2.15E-275 transposed
Lcy10g1169 Lcy-Chr10:34229942 Lcy9g1604 Lcy-Chr9:41227016 1.46E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1169 K17469 - csv:101211892 1046.19