Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1170 ATGATAGCATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTTCCATGAAGGATTACCAGCTTGATGGTAACAAAGAAATGGTGGCACTTGGAGCAATGAATGTCATTGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCATTCTCTCGCTCAGCTGTGAATTATATGTCTGGCTGCCAAACTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTCTAGAGTTCATCACTCCCCTTTTCAAGTACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAGGCAGCAATTTTGCTTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTATGGGAGCGTTCTTCGGCGTGATTTTTGCAAGTGTTGAGATAGGCCTCCTAATTGCTGTCGCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTTGCAGTACTTGGAAAGATCCCTAGGACCACAGTATACAGAAACACCCAACAATATCCAGAAGCAACAAGGGTTCCGGGCGTTCTAATTGTCAGAGTCGATTCTGCAATTTACTTTTCTAACTCCAATTACATCAAGGAGAGGATATTGAGATGGTTAGCAGATGAGGAAGAACAAATAAAGAAGGCTTATTCAACAAGAACTCAGTTTTTGATCATTGAGATGTCTCCTGTTACCGACATTGACACTAGTGGCATTCATGCCTTGGAAGAGCTATACAGGAATCTCCAGAAAAGAGACATTCAGCTTATTCTGGCAAACCCTGGGCCAGTCGTGATCGACAAACTCCATGCATCCAAACTCACTAATCTGATTGGCGAGGACCATATTTTTCTAACGGTTGCTGATGCTGTTTCATCCTGCTCTCCAAAATTGGTGGAAGAGGCCTAG 927 42.07 MIALTEAIAIGRTFASMKDYQLDGNKEMVALGAMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACMGAFFGVIFASVEIGLLIAVAISFAKILLQVTRPRVAVLGKIPRTTVYRNTQQYPEATRVPGVLIVRVDSAIYFSNSNYIKERILRWLADEEEQIKKAYSTRTQFLIIEMSPVTDIDTSGIHALEELYRNLQKRDIQLILANPGPVVIDKLHASKLTNLIGEDHIFLTVADAVSSCSPKLVEEA 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34269769 34276029 + Maker00008417 Lcy10g1170 644681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1170 308 CDD STAS_SulP_like_sulfate_transporter 178 293 - -
Lcy10g1170 308 Gene3D STAS domain 157 303 IPR036513 -
Lcy10g1170 308 ProSiteProfiles STAS domain profile. 177 300 IPR002645 -
Lcy10g1170 308 Pfam Sulfate permease family 1 126 IPR011547 GO:0016020(InterPro)
Lcy10g1170 308 SUPERFAMILY SpoIIaa-like 179 301 IPR036513 -
Lcy10g1170 308 PANTHER SULFATE TRANSPORTER 1 300 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1170 308 FunFam Sulfate transporter 31 157 303 - -
Lcy10g1170 308 Pfam STAS domain 178 296 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1170 Lcy-Chr10:34269769 Lcy9g1604 Lcy-Chr9:41227016 3.57E-174 dispersed
Lcy10g1169 Lcy-Chr10:34229942 Lcy10g1170 Lcy-Chr10:34269769 8.18E-90 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1170 K17470 - csv:101212138 555.829