Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1177 ATGGGCTCCATAGACATCCAATCAGCCAATGCCGAAAATGGATCCGCCGCCGCTTCTGCCGATGGTCGTCAAAAGTCAGTTCCCGCCGAACCTGTGAACCAGACATCTAACGAACCCGACGGAACGCCGCCTGAGAAGCCTAAAGAATTGGGGCCGACGAAGAAGCGTTTGTCCTCCATGCTTCCTCTCGAGGTCGGGACCCGCGTCATGTGCCGCTGGAGAGACGGGAAGTACCATCCCGTTAAGGTCATCGAACGTCGGAAGTTGCAGGCCACTGGTTTTAGTGATTACGAATACTATGTCCATTACACCGAGTTCAATAGGAGACTTGATGAGTGGGTGAAGCTTGACCAACTTGATCTTGATTCAGTTGAGACTGTTGTTGATGAGAAAGTGGAGGACAAGGTAACAGGATTGAAGATGACCCGACACCAGAAGCGAAAGATTGACGAAACACATGTTGAGGGCCATGAGGAACTTGATGCTGCCAGCTTGAGGGAGCATGAAGAATTTACGAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATATGAGATTGAGACATGGTATTTCTCCCCCTTTCCACCAGAATACAATGACACTACGAAACTCTATTTTTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAGGAACAGCTCCAGAGACATATGAGAAAGTGTGATCTCAAGCATCCCCCTGGTGATGAAATATATCGATGTGGTACTTTGTCAATGTTTGAGGTTGATGGAAAAAAGAACAAGGTTTATGGGCAGAACCTCTGTTACTTAGCAAAATTATTTCTGGACCACAAGACTCTATATTACGACGTTGACCTTTTTCTGTTTTATGTCCTTTGTGAGTGTGATGATCGAGGGTGTCACATGGTTGGATATTTTTCAAAGCATGGAATTATTTTTGTGACTATATTATCTGTCGGTGTGCAGGAAAAGCATTCAGAGGAATCCTATAATTTGGCGTGCATTCTCACCCTTCCTCCTTATCAAAGGAAGGGCTATGGCAAGTTCTTAATAGCTTTTTGTAAGTTCACATGGATTGAAGTAGCTCTATTTTTTTGGCTAATTGTGTCTGTAACTAGCAAGCTTGATGAGCTCTGTTCTCTAGCATTGAAAAGTATCACTGCTAGTTTTTCGCCAGCATGGTTTTTAATCTTTTATGAACCTGGGAGATCAGCTTATGAACTCTCCAAGAAGGAAGGTAAAGTTGGCACTCCTGAAAGACCTCTTTCTGACCTTGGGTTGGTGAGCTACAGAGGATACTGGACCAGAGTTCTCTTAGACATCTTGAAAAAGCACAAGGGCAATATCTCTATTAAGGAGCTAAGTGACATGACAGCTATCAAAGCCGAAGATATTTTGAACACACTTCAGAGCCTAGAGTTGATTCAATACAGGAAAGGGCAGCATGTTATATGTGCTGACCCCAAGGTGCTGGATCGTCATCTCAAAGCTGCTGGTCGTGGGGGCCTAGAGGTTGATGTTAGCAAATTGATCTGGACTCCATACAGAGAACAGGGTTGA 1542 44.1 MGSIDIQSANAENGSAAASADGRQKSVPAEPVNQTSNEPDGTPPEKPKELGPTKKRLSSMLPLEVGTRVMCRWRDGKYHPVKVIERRKLQATGFSDYEYYVHYTEFNRRLDEWVKLDQLDLDSVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKHGIIFVTILSVGVQEKHSEESYNLACILTLPPYQRKGYGKFLIAFCKFTWIEVALFFWLIVSVTSKLDELCSLALKSITASFSPAWFLIFYEPGRSAYELSKKEGKVGTPERPLSDLGLVSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILNTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYREQG 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34350211 34356386 - Maker00008832 Lcy10g1177 644688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1177 513 Gene3D - 230 352 - -
Lcy10g1177 513 FunFam Histone acetyltransferase 171 228 - -
Lcy10g1177 513 FunFam Histone acetyltransferase 416 495 - -
Lcy10g1177 513 Pfam RNA binding activity-knot of a chromodomain 63 121 IPR025995 -
Lcy10g1177 513 Pfam MOZ/SAS family 233 347 IPR002717 GO:0004402(InterPro)|GO:0006355(InterPro)
Lcy10g1177 513 Pfam MOZ/SAS family 399 475 IPR002717 GO:0004402(InterPro)|GO:0006355(InterPro)
Lcy10g1177 513 Gene3D - 416 487 IPR036388 -
Lcy10g1177 513 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 399 509 IPR016181 -
Lcy10g1177 513 CDD CBD_MOF_like 66 135 - -
Lcy10g1177 513 Gene3D - 173 229 - -
Lcy10g1177 513 SMART chromo_7 77 136 IPR000953 -
Lcy10g1177 513 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 172 508 IPR002717 GO:0004402(InterPro)|GO:0006355(InterPro)
Lcy10g1177 513 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 173 347 IPR016181 -
Lcy10g1177 513 MobiDBLite consensus disorder prediction 1 20 - -
Lcy10g1177 513 Pfam MYST family zinc finger domain 174 228 IPR040706 -
Lcy10g1177 513 MobiDBLite consensus disorder prediction 1 59 - -
Lcy10g1177 513 PANTHER HISTONE ACETYLTRANSFERASE 26 347 IPR050603 GO:0000790(PANTHER)|GO:0003712(PANTHER)|GO:0045892(PANTHER)|GO:0045944(PANTHER)
Lcy10g1177 513 FunFam Histone acetyltransferase 53 172 - -
Lcy10g1177 513 SUPERFAMILY Chromo domain-like 54 173 IPR016197 -
Lcy10g1177 513 Gene3D - 53 172 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1177 K11308 - csv:101217824 822.002