Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1182 ATGCATCATCTGCCTCAGTTTTTCTCTCCTAGGTACCGAAGAAAAGCCATGGATTCGAGAAAAGTTGCTGGAAAACCCAAGCTTGGCCGAGTTAATGCGGCCAAGAACATCGATTACGACGCTGGGTCCTCGTCTTCTTCGCTCGAAGATTATTCTGGGTCTCTTTATACTCGTTCCATGGAGACGCTGGATCCCTCGAGCTTCCGGATTAAAGGGCTTGAAGGCGAAGTTGATCTCATATGTCGGACTTTGGGGTTAGCGGGTCCTGAAGACTTTGCTATTCCGATGGAGGCTTGGGAGGCCAGAAAGGTTCGTTCATCGTCCGAGCTTCTACCGAAGTCGAGATTGTACCCTATGGATAGCCCGAAGAGTGAGGAGGTTAATAAGGAGAAGGAAGATAAAGCAGTGGATGATGAATTGTGTCGGAGGGTTAAGGATTCGGTTCGAATTAGCGTCGAGCAATCTACGCCCAAGACTGATCTCGACTTGAATGAACGCCGTATGGCTACTGCTACCGGATGTAGCTCGAGAAGTGGAATCAATGGTGCGCGGCCTCCCTTCCTCAAGCCGCCGCCGGTCATGCGGGTTCCTGATTTCGATACTACTTGCTCGACTTGGGACATTTTGAAATCTTTTGCTCCTTTAGTTGACGATGAAAATGAGGATGAAGTTCGAGAACGAGTCGAACCTTTAGTTGAAGGAGAAGGAGAGGGGAATATTGTCAGGCCTGCGGGGAACTCGCTCATTGGGTCTTGGGGTTCCTTCTCAACCTCGAATGATGATGATTGTTCGAGCAGTACCACGGAGCCTGCAAATATTTCACCTAATATGAGAAGTAAACCCATCATCACATCTTGGATAAAGGGTAGGGCTCTAGGGCACGGTTCATTTGGATCAGTATACGAAGCAATTTCAGAGGAAGGGATATTTTTTGCAGTTAAGGAAGTTTCACTGCTCGATGAAGATAGTCAGGGAAGACAAAGTATCTATCAGCTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAGTACTACGGCACAGATACGGATGGTTCAAAACTCTATATTTTTCTTGAGCTTGTATCTCAAGGCTCCCTTATGCATCTATATCAGAGGATTCAACTTATGGATTCCATTGTTGCTGCCTATACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGACCAAAATGTGATTCACAGGGATATTAAATGTGCTAATATATTGGTGGATGTGAATGGATCTGTGAAGCTTGCGGATTTTGGTTTGGCGAAGGCAACAAAAGTGAATGATGTTAAATCTTGCAAGGGAACTGCGTTCTGGATGGCACCTGAGGTGGTTAATGGGAAGGGCCAAGGATACGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACTCGAAAGCTTCCATACTCGGAATTCGAAAGTCATATGCAGGCACTATTTAAGATCGGAAAAGGCGTACCACCTGCAGTTCCCGAGTCTCTCTCAAAAGATGCACAGGATTTCATCCGGCAGTGCCTACAAGTTAATCCGAAAGATCGTCCTACTGCTGCTGATCTTTTAAATCACCCGTTTGTGAAAAAACCAGTTTCCAGTTTTTCTTCAGGGTCGGCATCTCCTTACAACAGGCACGACAGAAAGATTTAA 1689 45.94 MHHLPQFFSPRYRRKAMDSRKVAGKPKLGRVNAAKNIDYDAGSSSSSLEDYSGSLYTRSMETLDPSSFRIKGLEGEVDLICRTLGLAGPEDFAIPMEAWEARKVRSSSELLPKSRLYPMDSPKSEEVNKEKEDKAVDDELCRRVKDSVRISVEQSTPKTDLDLNERRMATATGCSSRSGINGARPPFLKPPPVMRVPDFDTTCSTWDILKSFAPLVDDENEDEVRERVEPLVEGEGEGNIVRPAGNSLIGSWGSFSTSNDDDCSSSTTEPANISPNMRSKPIITSWIKGRALGHGSFGSVYEAISEEGIFFAVKEVSLLDEDSQGRQSIYQLQQEIALLSEFEHENIVQYYGTDTDGSKLYIFLELVSQGSLMHLYQRIQLMDSIVAAYTRQILSGLKYLHDQNVIHRDIKCANILVDVNGSVKLADFGLAKATKVNDVKSCKGTAFWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSEFESHMQALFKIGKGVPPAVPESLSKDAQDFIRQCLQVNPKDRPTAADLLNHPFVKKPVSSFSSGSASPYNRHDRKI 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34420572 34427220 + Maker00008336 Lcy10g1182 644693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1182 562 MobiDBLite consensus disorder prediction 119 133 - -
Lcy10g1182 562 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1182 562 FunFam Mitogen-activated protein kinase 1, putative, expressed 284 553 - -
Lcy10g1182 562 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524(InterPro)
Lcy10g1182 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1182 562 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 118 542 IPR050538 -
Lcy10g1182 562 Gene3D Transferase(Phosphotransferase) domain 1 285 560 - -
Lcy10g1182 562 SMART serkin_6 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1182 562 MobiDBLite consensus disorder prediction 114 133 - -
Lcy10g1182 562 MobiDBLite consensus disorder prediction 171 193 - -
Lcy10g1182 562 Pfam Protein kinase domain 288 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1182 562 SUPERFAMILY Protein kinase-like (PK-like) 285 544 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1182 Lcy-Chr10:34420572 Lcy13g2029 Lcy-Chr13:39281776 2.16E-70 dispersed
Lcy10g1193 Lcy-Chr10:34590504 Lcy10g1182 Lcy-Chr10:34420572 6.10E-24 transposed
Lcy10g1923 Lcy-Chr10:43335639 Lcy10g1182 Lcy-Chr10:34420572 1.06E-33 transposed
Lcy11g1629 Lcy-Chr11:40112513 Lcy10g1182 Lcy-Chr10:34420572 7.78E-32 transposed
Lcy10g1182 Lcy-Chr10:34420572 Lcy7g0748 Lcy-Chr7:7208485 3.47E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65378 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1182 K13414 - csv:101218538 919.457