Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1194 ATGGCATCTGCCATGGCCAAAGCCAAAACGCAGAGAAAGCTCCTTCGACAGAACCATGAAAACCAGAAACCGAAGCCGCAGAAGGCAGAGAAGCCGCCGTCTTGGGCAGTTGTTAGAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAACAGCAACCAGAAAAACAACAACAGCAACATCAATTGCCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGAGTAGCAAGAACTGTAAGAAAATGAGGTGTTCGGGTTCACTCTGTAGCAACACTAAGGTAACACACAGGCTTGAAGCAGCAGCATCGCCGGAAGTTCACAAGAAAAGGGCATTGGCTTCAATGGGTTCCAAAAACAATGAGTCTTCGAGTTCAAGTAGATCCACGAAAGCTCCTCCTTTGAATGAACAAAATGGTGTTCTATCAGCCACATGTTCATCATTATCTGCATCATCTTCTTCTAATTCCTCGAATGGTGCCTCTTTCAGGGGAATGCCTTTCAGGAGGTTCTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTCCTTGGGATGACTAGAGATCCTTCTCTCAGAGCAACCATTTGCCCTTGTCCTCAATGTGGTGAGATTTTCATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTGTCTGAACTTGGTCCTGAAGACACGAGCAAGAACATAGTGGAAATCATATTCCAGTCGAGCTGGCTGAAAAAGCAAACACCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAGACCATCTCGAAATTCGAGGAATACAGGGACTCCATTAAAGCCAAAGCCACAAAGCTTCCAAAGAAGCACCCACGTTGCATAGCAGACGGCAACGAACTGCTAAGGTTCCACTGCACCACCTTGGCCTGTTCGCTGGGCCTAAATGGCTCCTCTAATCTCTGCAGTTCAATCCCACCATGCAATGTCTGTAACATAATCAAGAATGGGTTCAAGGTGGCCGCAGAGGCCACCGGAGGGGACACCGGAAAGGGCATTCTAACAACGGCAACAAGTGGAAAGGCTCATGACAGTGCCGGAATATCATCGGACGGGAATGACAAACGAGCAATGCTGGTTTGCCGGGTAATAGCTGGCAGGGTGAAGAAGAGTTCAGAAGGCAGCATGGAAGATTACGACTCATTGGCCGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTATACGTATTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTGATTTATGGAGGGTTTTAA 1296 46.6 MASAMAKAKTQRKLLRQNHENQKPKPQKAEKPPSWAVVRGIFSCKYLQPQQQPEKQQQQHQLPRKEKQQEQATEESSKNCKKMRCSGSLCSNTKVTHRLEAAASPEVHKKRALASMGSKNNESSSSSRSTKAPPLNEQNGVLSATCSSLSASSSSNSSNGASFRGMPFRRFYGCYECKMVIDPVLGMTRDPSLRATICPCPQCGEIFMKAETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCSSIPPCNVCNIIKNGFKVAAEATGGDTGKGILTTATSGKAHDSAGISSDGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34602364 34604784 + Maker00008799 Lcy10g1194 644705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1194 431 MobiDBLite consensus disorder prediction 47 78 - -
Lcy10g1194 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 226 IPR013087 -
Lcy10g1194 431 MobiDBLite consensus disorder prediction 59 78 - -
Lcy10g1194 431 Coils Coil 55 75 - -
Lcy10g1194 431 Gene3D - 222 429 - -
Lcy10g1194 431 MobiDBLite consensus disorder prediction 116 139 - -
Lcy10g1194 431 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 428 - -
Lcy10g1194 431 MobiDBLite consensus disorder prediction 101 139 - -
Lcy10g1194 431 MobiDBLite consensus disorder prediction 13 27 - -
Lcy10g1194 431 MobiDBLite consensus disorder prediction 101 115 - -
Lcy10g1194 431 ProSitePatterns Zinc finger C2H2 type domain signature. 198 221 IPR013087 -
Lcy10g1194 431 SUPERFAMILY ADP-ribosylation 223 429 - -
Lcy10g1194 431 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1194 Lcy-Chr10:34602364 Lcy9g2259 Lcy-Chr9:47104776 3.53E-104 dispersed
Lcy10g1194 Lcy-Chr10:34602364 Lcy6g1271 Lcy-Chr6:15869757 1.71E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18976 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1194 - - - 0.0