Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1207 ATGGCCAACGACCAGCTCGAAGTTCTCAACGTCCTCGACCGTGCTAAAACCCAATTCTACCACTTCACGGCGGTCGTAATCGCCGGAATGGGCTTCTTCACCGATTCCTACGACCTCTTCTGTATCTCTCTTGTCACCAAACTCCTCGGCCGCATCTACTACACCGTCCCCGGCTCTCCCCGCCCCGGAACCCTCCCTCCCGCCGTCGCCGCCGCCGTCAACGGCGTAGCCCTCGCCGGCACCCTCGCCGGCCAACTCTTCTTCGGCTGGCTCGGCGACAAGCTCGGCCGGAAACGCGTCTACGGCCTCACCCTCATCCTCATGGTCGTCTGTTCCATCGCCTCCGGCCTCTCCTTCAGCAGCTCTCCCACCGCTGTCATCACCACCCTCTGTTTCTTCCGGTTCTGGCTCGGCTTCGGCATCGGCGGCGACTACCCCTTATCCGCCACCATCATGGCCGAATACTCCAACAAGAAAACCCGCGGCGCCTTCATCGCCGCCGTCTTCGCAATGCAGGGCTTCGGAATTCTCGCCGGCGGCGCGGTGGCGATCGTGATCTCCTCGGTCTTCAGAACCCTCTTCCACGCGCCGCCGTACTCCGTCGATCCGGTGAGATCGACAGTCCCAGAGGCGGATTACGTCTGGAGAATTATATTGATGTTGGGATCGTTGCCTGCGCTCTTGACTTACTACTGGCGGATGAAGATGCCGGAAACGCCGCGCTACACGGCGTTGGTGGCGAACGACGAGAAGAAAGCCCGCGACGACATGTCGAAAGTGCTGAACGTTGAAATCGGTCAAAACGCTGAGACTCATACCAAAATCAAAACAAATTCATTTGGGTTTTTCAGCAGAGCGTTCGTTCGTCGACATGGGCTTCATCTTTTAGGGACGGCGAGCACTTGGTTTCTGATCGACGTGGCGTATTACAGCCAGAATCTGTTCCAGAAGGACATTTTCAGCGCCGTGGGCTGGCTGCCGGCGGCGAAGACCATGAGCGCTTTGGATGAGGTTTTCAAAATCGCCAAAGCTCAGACTCTGATCGCTCTGTGTGGGACGGTTCCCGGGTACTGGGCGACGGTCCTCCTAATCGACCGGGTCGGTCGGTTTTTCATTCAGGTGGTTGGGTTTTTTTTCATGACGGTTTTCATGTTTGCGCTTGCGATTCCTTACCATCATTGGACTGAGAACCATGTGGGGTTCGTTGTGATGTATGGACTCACTTTTTTCTTTGCTAATTTTGGTCCTAATTGTACTACGTTTGTTGTCCCGGCCGAGATTTTCCCGGCGAGGTTTCGGTCGACTTGCCACGGGATTTCGGCCGCCGCCGGGAAGGCGGGAGCCATCGTTGGAGCTTTCGGGTTCTTGTATGCAGCTCAGAGCCAGGATGGGAGTAAGACGGATGCAGGCTATCCACCTGGGATTGGAATGAGGAATTCTTTGATAATTTTGGGAGTTGTTAATGTGGTTGGGTTGCTTTTTACTTTCTTGGTTCCGGAATCCAAAGGGAAGTCTTTGGAAGAAATGTCTAAGGAGAATGAAGTTGAAGAAGAAGAAGAAGAAAGAAGGGAAGAGCAAGCTAATGGAGTTCATCAGATTGTTTAG 1605 54.77 MANDQLEVLNVLDRAKTQFYHFTAVVIAGMGFFTDSYDLFCISLVTKLLGRIYYTVPGSPRPGTLPPAVAAAVNGVALAGTLAGQLFFGWLGDKLGRKRVYGLTLILMVVCSIASGLSFSSSPTAVITTLCFFRFWLGFGIGGDYPLSATIMAEYSNKKTRGAFIAAVFAMQGFGILAGGAVAIVISSVFRTLFHAPPYSVDPVRSTVPEADYVWRIILMLGSLPALLTYYWRMKMPETPRYTALVANDEKKARDDMSKVLNVEIGQNAETHTKIKTNSFGFFSRAFVRRHGLHLLGTASTWFLIDVAYYSQNLFQKDIFSAVGWLPAAKTMSALDEVFKIAKAQTLIALCGTVPGYWATVLLIDRVGRFFIQVVGFFFMTVFMFALAIPYHHWTENHVGFVVMYGLTFFFANFGPNCTTFVVPAEIFPARFRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDGSKTDAGYPPGIGMRNSLIILGVVNVVGLLFTFLVPESKGKSLEEMSKENEVEEEEEERREEQANGVHQIV 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34700752 34702356 - Maker00008761 Lcy10g1207 644718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1207 534 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 13 508 - -
Lcy10g1207 534 MobiDBLite consensus disorder prediction 504 534 - -
Lcy10g1207 534 Gene3D MFS general substrate transporter like domains 20 527 IPR036259 -
Lcy10g1207 534 Coils Coil 506 528 - -
Lcy10g1207 534 CDD MFS_PhT 25 502 - -
Lcy10g1207 534 FunFam Inorganic phosphate transporter 1-6 20 524 - -
Lcy10g1207 534 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 503 IPR020846 GO:0022857(InterPro)
Lcy10g1207 534 Pfam Sugar (and other) transporter 26 511 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy10g1207 534 NCBIfam phosphate:H+ symporter 11 512 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Lcy10g1207 534 SUPERFAMILY MFS general substrate transporter 11 512 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1207 Lcy-Chr10:34700752 Lcy12g2120 Lcy-Chr12:42491286 1.44E-291 dispersed
Lcy10g1207 Lcy-Chr10:34700752 Lcy12g2119 Lcy-Chr12:42485577 5.22E-293 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1207 K08176 - csv:101205342 892.878