Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1214 ATGATGAATTCTTCTATTTTGAGTAAGTTGAAACCTTATGTTCTTGTGGTGAGTCTACAATTTGGAATGGCAGGCATATATTTAATATGCATGGTCACTCTAACCCAAGGCATGAGTCGCTACATTTTGATTGTGTATCGAAACATCGTTGCTGCTCTCTTTCTCGCTCCCTTCGCTCTTATCTTCGAAAGGAAAACAAGGCCAAAGATGACCCTTTCGGTCGCTATGCAAATCATGGTCTTGGGCTTTCTAGAACCGGTTGTCGATCAGGGGTTCGGTTATTTGGGGATGACGTACACTTCGGCATCATTTACTTCGGCCATCATGAACGCTGTGCCCTCTGTTACCTTTATCATTGCAGTAATTTTTCGAATGGAACGTGTAAATATAAAACAAATACGAGGTTTAGCCAAGGTCGTTGGAACTTTAGTGACCTTCGCCGGAGCTTTGGTCATGACACTTTACAAAGGCCCAATTCTCGATTTCTTTTGGACTCGAAAAGCCAACCACCACTTTAACAGCGGCGGCGCCGCCGCCAATCAGCACTGGGTGGCCGGAACTTTGTTCATCCTTCTCGGTTGTGTGGCTTGGTCTTGTTTCTATGTATTACAATCTGTAACAGTGAAGAGATATCCAGCAGATCTGACTCTTTCGTCATTGATATGCTTGGCTGGAGCACTTCAAAGCACAGTGATAGCAGTGGCCATAGAGCATCGTGCTAGCGCCTGGGCGGTGGGCTGGGACTCCAGGCTTCTCGCTCCTCTCTATACGGGAATAGTTGGGTCAGGAATTACATATTACTTCCAAGCTCTTGTTATGAAGACGAGAGGCCCTGTATTTGTGACGGCTTTCAACCCTTTATGTATGATTGTTGTCTCAATATTATCCTCCATTATTCTCGCCGAGAAGATCCATCTTGGAAGCGTTATTGGAGCCATCATCATCGCAATTGGCCTTTATTCAGTTGTTTGGGGTAAAAGCAAGGATTATTCCACCGCCTCCGGCCACCCTGAAAAGCCTAACGCCGCCGTGCCGGAGCTCCCAATTATTGCCTCTAAACTCGCCGCCGAACAAGATGCTCATGATCTTCAACCTCCAAAATGA 1104 46.11 MMNSSILSKLKPYVLVVSLQFGMAGIYLICMVTLTQGMSRYILIVYRNIVAALFLAPFALIFERKTRPKMTLSVAMQIMVLGFLEPVVDQGFGYLGMTYTSASFTSAIMNAVPSVTFIIAVIFRMERVNIKQIRGLAKVVGTLVTFAGALVMTLYKGPILDFFWTRKANHHFNSGGAAANQHWVAGTLFILLGCVAWSCFYVLQSVTVKRYPADLTLSSLICLAGALQSTVIAVAIEHRASAWAVGWDSRLLAPLYTGIVGSGITYYFQALVMKTRGPVFVTAFNPLCMIVVSILSSIILAEKIHLGSVIGAIIIAIGLYSVVWGKSKDYSTASGHPEKPNAAVPELPIIASKLAAEQDAHDLQPPK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34795201 34800213 + Maker00008577 Lcy10g1214 644725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1214 367 PANTHER WAT1-RELATED PROTEIN 14 330 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy10g1214 367 Pfam EamA-like transporter family 23 141 IPR000620 GO:0016020(InterPro)
Lcy10g1214 367 Pfam EamA-like transporter family 186 323 IPR000620 GO:0016020(InterPro)
Lcy10g1214 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 153 - -
Lcy10g1214 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1214 Lcy-Chr10:34795201 Lcy5g0821 Lcy-Chr5:12921925 2.09E-113 dispersed
Lcy10g1214 Lcy-Chr10:34795201 Lcy10g1215 Lcy-Chr10:34805082 5.13E-65 tandem
Lcy10g1214 Lcy-Chr10:34795201 Lcy7g0734 Lcy-Chr7:7054917 2.13E-109 wgd
Lcy10g1214 Lcy-Chr10:34795201 Lcy9g1576 Lcy-Chr9:40945254 5.57E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1214 - - - 0.0