Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1217 ATGAGTACTCTCCTCGATAAGAACTTTGAACATATGAAGATGGCACCTTATACCAGTCTTGTCACTAGTTGCTTAGAAGGCGTTGAGGAAGACAATGCTTCAAAAGATTCTGAGGAGACTGGGGGGAAAGGTGTAAGTAGAGAACAAGCGGCTGAGTCTCTTGAAGGGCATCAGTCCAAAAAAGGTGTAAAAGAACCTTCCTTGGAAGATGAGGTTAAAATGGAAGACTCTCCAGTCATGGGCCTTCTCACCGGACGTAAAGCGACAAATGTTGAATCTAAGGGAATCAAAGGAATCAAAGACAAAGATGACAAAGATATTCCTAGTGAGATTACAATTAAGAAAGCTATTAGAAAAAGAATTCCTTATCTTAAAGCTAATTCAGAGAAAGTTACTATGTTTGGAGTTCGTCGCCTTCTGGAGGATGACCTTAAACTTACTAAATTTGCTCTCGATAGTTTCAAGAAGTTTATAAGCAAGGAAGTGGAGGATATATTAAATTCTTGTGAAGCTGCCGAACAAGTTTCTAATGAAAAGAAAAGTTCTCGTTTGAAAACTCCGAAAAAGGTAACGAATGAAAGCTCTCATTCTACTGAAGGGAGCAGTAGTGAGGAGGAAAACGATGAAGTAAAACCTGGAAAGAAAAATGCAACTAAAGGAAGAATAGCGAACTCTAACGAAATGAAAAAGCGAAAAAGGTCTACAAAGGAGACTGTCTCTGCCAAGAAGCAGAGCAAGCATGCCCAGCATTCATCAGAGGACGATGGTGATGAAGAAGGTGGTGAAAATGTCTCTGAAGATGGCCAGTCTGAATCATCCAATGAAAAACCTGTTAAGAAGGAAGTTTCAACTCCTGTCTATGGCAAGCGTGTGGAGCACTTGAAATCGGTTATCAAATCATGTGGGATGAGTGTTCCTCCATCGATTTATAAGAAAGTTAAGCAGGCACCTGAAAGCAAACGTGAATCACAACTTATAAAGGAGTTGGAGGGAATACTATCCAGAGAAGGATTGTCTGCTAATCCCACTGAAAAAGAAATTAAAGAAGTCAAAAAGAAGAAGGAAAGAGCCAAAGAACTTGAAGGCATTGACTTGAGTAATATTGTCTCAAGTTCACGTAGGAGATCCACGACCAGTTATCTACCACCACCACCACCTCCAAAACCGAAAATACCAGTTGAAACTGATGGTGATGATGGTGATGATACTGATGAGGAGGAGGAGGAGGAGGACGACGACGAAGAGGATGACGAGGAGGATGACGATGAAGAGGATAATGGTGATGTTGATGAAAGCCCGGGTGAAGAATTCAATGATGAGGACAATGAAGACAGTGATTGA 1341 40.94 MSTLLDKNFEHMKMAPYTSLVTSCLEGVEEDNASKDSEETGGKGVSREQAAESLEGHQSKKGVKEPSLEDEVKMEDSPVMGLLTGRKATNVESKGIKGIKDKDDKDIPSEITIKKAIRKRIPYLKANSEKVTMFGVRRLLEDDLKLTKFALDSFKKFISKEVEDILNSCEAAEQVSNEKKSSRLKTPKKVTNESSHSTEGSSSEEENDEVKPGKKNATKGRIANSNEMKKRKRSTKETVSAKKQSKHAQHSSEDDGDEEGGENVSEDGQSESSNEKPVKKEVSTPVYGKRVEHLKSVIKSCGMSVPPSIYKKVKQAPESKRESQLIKELEGILSREGLSANPTEKEIKEVKKKKERAKELEGIDLSNIVSSSRRRSTTSYLPPPPPPKPKIPVETDGDDGDDTDEEEEEEDDDEEDDEEDDDEEDNGDVDESPGEEFNDEDNEDSD 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34819183 34823308 - Maker00008533 Lcy10g1217 644728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1217 446 MobiDBLite consensus disorder prediction 176 192 - -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 341 362 - -
Lcy10g1217 446 Coils Coil 340 360 - -
Lcy10g1217 446 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 107 167 IPR014876 -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 53 76 - -
Lcy10g1217 446 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 397 446 - -
Lcy10g1217 446 Pfam Histone chaperone domain CHZ 355 380 IPR019098 -
Lcy10g1217 446 PANTHER HIRA-INTERACTING PROTEIN 3 20 445 IPR037647 GO:0005634(PANTHER)
Lcy10g1217 446 MobiDBLite consensus disorder prediction 171 289 - -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 29 45 - -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 224 254 - -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 199 216 - -
Lcy10g1217 446 SMART CHZ_2 354 389 IPR019098 -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 28 86 - -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 337 446 - -
Lcy10g1217 446 MobiDBLite consensus disorder prediction 272 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1217 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g282 . . . . . . . . . Cmo15g00703 . . . . Sed03g0794 . . Bhi04g01926 Tan11g1290 Cmetu03g0298 . Hepe02g2282 . Lcy10g1217 Cla08g00580 Cam08g0995 Cec08g0584 Cco08g0694 Clacu08g0704 . Cre08g0515 . . . Cone20ag0450 . . . Cme03g00572 Blo17g00180 . . . . Bpe14g00380 . Bma02g00220 . . . . . . Car15g00634 . . . . . . . . . . . . . . . . Lsi08g00426 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011404 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 2 1 1 31