Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1220 ATGCTCCGACGAGGAATCGAGCGCGACAAGACCCGGATACAGAATTTCAATATGATGGCCATAAGTAACTTCGATGTTGAAATGCCTGTTGTTGAGAGAAAGAGAAGCTATCTGATGAACTTGTCGCTCAGGATGCCTCCAGTTTCGTTCTCTGCCATTGCCGATACTGGCAGCGACTTGATTTGGACGCAGTGCAAGCCATGCTTGCAATGCTTTGAGCAGCCAAGCCCTGTGTATGATCCTGCACGATCGTCTTCCTTTGCCAATGCCACTTCCTCTGCTGCATTGTGCAAGGCTTTGACCAATTCTAGTTCCAGCAATGGTTGTGAGTATTCGGTTGGTTATGGAGACGGGTCTTCGACCAAAGGTTATTTAGCATTCGAGACTTTGACGCTCGGAGAAGCAAACCAGCAAGTTTCTGCACCAGACATAGCTTTCGGGTGCGGGCTAAAGAACCACGTGAAGGGCCTGAAACAGGGTGCTGGCATGGTGGGACTCAGTCGAGGACCATTGTCGCTTATTTCGCAGCTCGACATTCACAAATTTTCTTACTGTTTAACTCCAAATGGAACTGGGAGTCTGAACTTAGAATCTTCAACAAGTATCGACAACACTACGAATCGAGCCATCAAGGATGCTTTTGATGTGCTGAAACCATTTTTCACTGCCCAGACAAACCTCCCAGTGAAACATTCAGCAGGCATTGGTCTTGATCTCTGCTTTGAGCTGCCTTCCCACAACAAAAGCAAACTTGATGTGCCTGATTTGGTATTTCATTTCGAGGGGCTCAACTTGAAGCTTCCAGTCGAGAACTATATGGTCACCGATGAGGAGCGGGGGTTGGTGTGCTTGGCAATGGGAGCTGCAGGAGCTTTGTCAATTTTCGGCAGCATGCAACACCAGAATATGTTGGTTCTTCATGATCTCAAGAAGGAAGTTGTATCATTTGTTCCCACACAGTGTGCTCGGCTCGGTAACTAG 981 47.71 MLRRGIERDKTRIQNFNMMAISNFDVEMPVVERKRSYLMNLSLRMPPVSFSAIADTGSDLIWTQCKPCLQCFEQPSPVYDPARSSSFANATSSAALCKALTNSSSSNGCEYSVGYGDGSSTKGYLAFETLTLGEANQQVSAPDIAFGCGLKNHVKGLKQGAGMVGLSRGPLSLISQLDIHKFSYCLTPNGTGSLNLESSTSIDNTTNRAIKDAFDVLKPFFTAQTNLPVKHSAGIGLDLCFELPSHNKSKLDVPDLVFHFEGLNLKLPVENYMVTDEERGLVCLAMGAAGALSIFGSMQHQNMLVLHDLKKEVVSFVPTQCARLGN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34846901 34848055 + Maker00008651 Lcy10g1220 644731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1220 326 PANTHER OS07G0603500 PROTEIN-RELATED 221 318 IPR051708 GO:0005576(PANTHER)
Lcy10g1220 326 Pfam Xylanase inhibitor N-terminal 37 195 IPR032861 -
Lcy10g1220 326 Gene3D Acid Proteases 193 325 IPR021109 -
Lcy10g1220 326 CDD pepsin_A_like_plant 37 321 IPR034161 -
Lcy10g1220 326 Gene3D Acid Proteases 17 192 IPR021109 -
Lcy10g1220 326 SUPERFAMILY Acid proteases 35 324 IPR021109 -
Lcy10g1220 326 ProSiteProfiles Peptidase family A1 domain profile. 37 326 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1220 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1220 Lcy-Chr10:34846901 Lcy7g1986 Lcy-Chr7:46425544 7.43E-146 dispersed
Lcy10g1220 Lcy-Chr10:34846901 Lcy7g1984 Lcy-Chr7:46405654 2.41E-169 wgd
Lcy10g1220 Lcy-Chr10:34846901 Lcy7g0705 Lcy-Chr7:6648241 3.88E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g279 . . . . . . . . . . . . . . . . . Bhi04g01921 . . . Hepe02g2278 . Lcy10g1220 Cla08g01171 Cam08g1635 Cec08g1208 Cco08g1331 Clacu08g1331 . Cre08g1117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01032 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002918 1 2 1 2 1 2 1 2 2 2 2 2 1 1 2 2 2 2 1 2 1 2 2 2 5 2 1 1 2 1 52