Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1224 ATGGAAAGAAGAAAATGGCCATGGAAGAGAAAGTCATCTGATAAGAGTCCTGGAGAAACTGAAAGTTCTGGTTCAATGTCATCTTATTCTGAGAGATTTTCCGACGAGCAGGACGCAACCAAGTCATCTCCTAATCACGAGACTCAGTCTCCAGAAGTAACTTCAAAAGCAGTATGTAAGGAGGAAATTGATGTTGACTCACCAAAACAAGAAGATATCAATGATAGTGTGAAGGATCTCACGGATAGGTTATCTGCTGCTCTTTTGAATGTGAGGTCAAAAGAAGACTTGGTAAAGCAGCATGCTAAAGTTGCTGAAGAAGCTATTGCAGGATGGGAAAAGGCAGAAAATGAGGTCGGACTTCTAAAACAGCAGATTGGGACTACAGTTCAACAAAAGTCTGCATTGGAAGATCGAGTGAGCCACCTTGATGGGGCCCTCAAAGAATGTGTTAGGCAGCTTAGGCAGGCAAGGGAGGAGCAAGAGCAGAAGATTCGTGATGCCGTAGAGGAAAAAACCCGTGATTGGGAGTCCACCAAGGTGGAGCTTGAGAACCAGCTCCTTGAGCTCCAGATCAAAGCAGATGCTGCTAAATCTGAAGCTCCCCAAGTTGATCCTAGCCTTGGCAAGATGCTTGAGTCATTGAAAAGAGAGAATGCAGCCCTCAGGCATGAACTCCATGCTCAATATAAGGAGTTAGAAACCAGAACTATTGAGAGGGATTTGAGTACACAAACAGCTGAAACAGCCAGTAAGCAGCATCTTGAGAGCATAAAGAAAATGGCCAAACTCGAGGCTGAGTGTCGTAGGTTAAGAGTAATGTCATCCAAACCATCATTAGTTAATGATCATAAATCCAGAGCTGCTTCGATAATTTCAATTGAGTCACTTACTGACACTCAATCAGACAACGGGGACCAGCTTAATGCAGTGGATAGTGATACAAGAAGAACGGAACGAAACAAATGTGAACCTAGCTGCTCAGACTCATGGGCAGACCTTAATCAGCTTGGGAATGAAAAGGCTGCTAGCAGTAATCTTCCTTCTTCTCTTGAACTTGATCTCATGGATGATTTTCTTGAGATGGAGAGGCTTGCTTCATTGCCCGAAACTGATACAGAAAAGTGTCACCAAGAACCAGAAGCATCTGCTCGCCCAACTGCAGAAGAAAGTGCCATGAGAACCGAGCTTGAAACCTTGCGGCATGAGAGATCTTTGATGGAAGAGAAACTGTGTGAGATGGAAGAAGCAAAGATTGAATTGGAAGAGAAGCTGAAACAAATTGAATTGGAGAAGGACGAAATGGAAGAGAGGCTAGAGATGATGGAAACAGACAGAACTGAAGTGAACCGAATTTTAGAGACGATGGAGACCGAGAAATTTGAATTGGGGCAGAAGTTAGTGAAGATGGAAGCAGAGAAAGTTGAAATGGAAGAGAAATTAATGAAGTTAGAGGCAGAGAAAGAAGAACTGGAGACTGCTTTATCCCAGAGTCAGAACTCTGTTGACATTTCACAATCTCAACTCAAGGAAACAGAAATGAAACTGGAAAGGTTACAGAATGAGCTCATCATTGCAAACGAATCAAAGCTAAGAATTGAGTCTCAACTTATCAGCATGGAAGCTGAATCTCTGACCATGTCTGCAAAAGTGGGCATGTTGGAATCTGATATTCAAAAAGAGAGGGCTTCAGCATTGGCATTGGCAGTCAAGTGTCAGGAACTAGAAGAAGAGTTTTCAAGAATTAAACAGGAAGAAAAACAATCACAAAGTGAAAGCTCCAAAAATGAATTGAAGATAAAGCAGGAGGATCTAGCTGTAGCTGCTGGGAAGCTTGCTGAGTGTCAAAAGACAATTGCTTCTCTTGGGAATCAGTTAAAATCTCTAGCAGCACTTGAAGATTTTCTGATCGACACGACACAACTACCGGAGTTCACAACCAGCGAATCGCTTAATATTACTAGAGATGGCGAGGAGCAATGCAAGCATTCAAATGGGACACTTTCACCCAGAAGAGATTCAGACTATACTAAAGTAGTTGATGACAATGCTGAACCATCAATGAGTAAGAATGAAGACGACTCGCCCCCGTCTTCATCTTCGTCAACTTCATCATCTGTGATCACAAATCATGTTGTTAATTCTGAGAAAAACCGAAATGGTTTTGCGAAGTTTTTCTCTCGAACCAAGAGCGGGATAAAACTAGAAATTTAG 2214 42.41 MERRKWPWKRKSSDKSPGETESSGSMSSYSERFSDEQDATKSSPNHETQSPEVTSKAVCKEEIDVDSPKQEDINDSVKDLTDRLSAALLNVRSKEDLVKQHAKVAEEAIAGWEKAENEVGLLKQQIGTTVQQKSALEDRVSHLDGALKECVRQLRQAREEQEQKIRDAVEEKTRDWESTKVELENQLLELQIKADAAKSEAPQVDPSLGKMLESLKRENAALRHELHAQYKELETRTIERDLSTQTAETASKQHLESIKKMAKLEAECRRLRVMSSKPSLVNDHKSRAASIISIESLTDTQSDNGDQLNAVDSDTRRTERNKCEPSCSDSWADLNQLGNEKAASSNLPSSLELDLMDDFLEMERLASLPETDTEKCHQEPEASARPTAEESAMRTELETLRHERSLMEEKLCEMEEAKIELEEKLKQIELEKDEMEERLEMMETDRTEVNRILETMETEKFELGQKLVKMEAEKVEMEEKLMKLEAEKEELETALSQSQNSVDISQSQLKETEMKLERLQNELIIANESKLRIESQLISMEAESLTMSAKVGMLESDIQKERASALALAVKCQELEEEFSRIKQEEKQSQSESSKNELKIKQEDLAVAAGKLAECQKTIASLGNQLKSLAALEDFLIDTTQLPEFTTSESLNITRDGEEQCKHSNGTLSPRRDSDYTKVVDDNAEPSMSKNEDDSPPSSSSSTSSSVITNHVVNSEKNRNGFAKFFSRTKSGIKLEI 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34889332 34894394 + Maker00008453 Lcy10g1224 644735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1224 737 Coils Coil 400 536 - -
Lcy10g1224 737 Coils Coil 140 200 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 656 712 - -
Lcy10g1224 737 Coils Coil 558 592 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 1 76 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 690 712 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 656 689 - -
Lcy10g1224 737 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 476 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 1 17 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 57 76 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 300 329 - -
Lcy10g1224 737 Pfam Filament-like plant protein, long coiled-coil 472 631 IPR008587 -
Lcy10g1224 737 Pfam Filament-like plant protein, long coiled-coil 207 274 IPR008587 -
Lcy10g1224 737 Pfam Filament-like plant protein, long coiled-coil 94 201 IPR008587 -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 369 384 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 18 33 - -
Lcy10g1224 737 Coils Coil 212 232 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 310 326 - -
Lcy10g1224 737 MobiDBLite consensus disorder prediction 369 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1224 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1224 Lcy-Chr10:34889332 Lcy9g2252 Lcy-Chr9:47050996 2.81E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47