Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1230 ATGAATTCCTCCGCTAGATTTTCCATAATCCTCTTTCTCCTGATTCATACCACCTTCTCCGTCGCCATATCCTCCCCGGTCGCCGCTGATCACGCCGGCTCTCCTCTAATCGGCGCCGGCTGCGCCATCAAACCTTTGCCGAATTCTAATTCTCTCAAGAATCAGAGTATTGGAACGTTGATGTCCGGATTGGAATCTCGGACCTGCGAGGTCTGGACGGAGGCCTGCTCTGAGGCGATCCTCGGTTTGGCGAAGCGGCCGGAGGTGGTTGATTGGTTGAAGAAGGTCAGGAGAAGAATCCACGAGAATCCGGAGCTTGCGTTTGAGGAATTCGAGACCAGTCAGTTGGTTCGCGATGAGTTGGACCGGATGGATATTAGCTACGAACATCCGTTGGCTAAGACAGGCGTTCGTGCTTGGATCGGGACTGGCGGACCGCCGTTTGTTGCTCTTAGGGCAGATATGGACGCTCTTCCAATCCAGGAAGCTGTGGAGTGGGAGCACAAAAGCAGAGTCCCAGGCAAGATGCATGCCTGTGGGCACGATGCTCACGTTACAATGCTTCTTGGTGCTGCCAAGATCTTAAAGGATCGGGAACATCTCTTGAAGGGGACGGTGATTCTGCTGTTTCAGCCAGCTGAGGAAGCTGGCAATGGCGCAAAGCGAATGATCGGCGATGGGGCTTTAAGAGACGTGCAAGCCATTTTTGCAGTTCATGTTTCTCATGAACATCCCACCGCCATTATTGGCTCCCGGCCCGGTCCTCTGCTCGCCGGCTGTGGTTTCTTTAGGGCGGTGATTACCGGCAAGAAGGGTCGGGCCGGTTCGCCTCACCGCTCCGTCGACCCGGTTCTGGCTGCCTCGGCCGCCGTTATCAGCTTGCAGGGGATTGTGTCTCGTGAAGCAAATCCTTTAGATTCGCAGGTTGTGTCAGTGACTTCTTTCAATGGAGGGAGTAATCTGGATATGATACCGGACACCGTCGTCATTGGTGGTACTTTTAGGGCTTTCTCCAACTCTAGCTTCTACCAAGTTCTTCAAAGAATAGAGGAGGTAATCGTGGAGCAAGCTAGTGTCTACAGATGCTCGGCAACGGTGGACTTCTTCGAAAAAGAGTACACCATATACCCTCCAACCGTAAACGACGAAAAGATGTATGAGCATGTGAAGAAAGTGGCCATGGACCTACATGGTTCACACAATTTCAGGGTGGTCCAACCAATGATGGGAGCCGAGGACTTTTCCTTCTACTCGGAGTTTATTCCTGCAGCCTTCTATTACATAGGAGTTAGGAACGAGACCTTAGGCTCCATCCACACAGGCCACTCCCCCTACTTCATGATTGATGAAGACGTCTTACCAATTGGCGCTGCAACTCACGCGACCATCGCCGAGAGGTACCTGTACGAGCATGGAGAATGA 1422 52.46 MNSSARFSIILFLLIHTTFSVAISSPVAADHAGSPLIGAGCAIKPLPNSNSLKNQSIGTLMSGLESRTCEVWTEACSEAILGLAKRPEVVDWLKKVRRRIHENPELAFEEFETSQLVRDELDRMDISYEHPLAKTGVRAWIGTGGPPFVALRADMDALPIQEAVEWEHKSRVPGKMHACGHDAHVTMLLGAAKILKDREHLLKGTVILLFQPAEEAGNGAKRMIGDGALRDVQAIFAVHVSHEHPTAIIGSRPGPLLAGCGFFRAVITGKKGRAGSPHRSVDPVLAASAAVISLQGIVSREANPLDSQVVSVTSFNGGSNLDMIPDTVVIGGTFRAFSNSSFYQVLQRIEEVIVEQASVYRCSATVDFFEKEYTIYPPTVNDEKMYEHVKKVAMDLHGSHNFRVVQPMMGAEDFSFYSEFIPAAFYYIGVRNETLGSIHTGHSPYFMIDEDVLPIGAATHATIAERYLYEHGE 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34964379 34968757 + Maker00008754 Lcy10g1230 644741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1230 473 PANTHER PEPTIDASE M20 FAMILY MEMBER 72 471 IPR017439 GO:0005783(PANTHER)|GO:0009694(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(InterPro)|GO:0016787(PANTHER)
Lcy10g1230 473 Pfam Peptidase family M20/M25/M40 150 465 IPR002933 GO:0016787(InterPro)
Lcy10g1230 473 SUPERFAMILY Zn-dependent exopeptidases 88 470 - -
Lcy10g1230 473 Pfam Peptidase dimerisation domain 263 357 IPR011650 -
Lcy10g1230 473 PIRSF Amidohydrol_AmhX 82 472 IPR017439 GO:0016787(InterPro)
Lcy10g1230 473 FunFam N-acetyldiaminopimelate deacetylase 258 376 - -
Lcy10g1230 473 NCBIfam amidohydrolase 95 456 IPR017439 GO:0016787(InterPro)
Lcy10g1230 473 Gene3D - 258 376 - -
Lcy10g1230 473 Gene3D Zn peptidases 95 453 - -
Lcy10g1230 473 SUPERFAMILY Bacterial exopeptidase dimerisation domain 259 368 IPR036264 -
Lcy10g1230 473 CDD M20_IAA_Hyd 93 468 IPR044757 GO:0009850(InterPro)|GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1230 K21604 - - csv:101215789 848.966
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1230 Lcy-Chr10:34964379 Lcy13g0171 Lcy-Chr13:1781085 9.45E-172 dispersed
Lcy10g1230 Lcy-Chr10:34964379 Lcy1g1223 Lcy-Chr1:11593451 8.10E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35