Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1232 ATGGAGTTGAAAGCAGATGTAGCAGAAGTCCAACAAGTACAGCAACATTTCCATGTGCTGGCAGTGGATGATAGCCTTATAGACAGAAAGCTTTTGGAAAAGCTCCTAAGAATTTCTTCATGCGAAGCAGTGACCTGCGTGGAGTCTGGAGATAAAGCTCTTAGATATCTGGGTCTGCTTGATGACCTTGACAAATTTTCTTCTTCTGCTGCTTCATTTTCTTCCCAACAACTCTCTCACCAACAGCAAGTCAAAGTCAACCTAATCATGACAGACTACTGTATGCCTGGGATGACTGGTTATGATCTACTCAAACGACTCAAGGGATCTTCTCGGAAAGATATTCCTGTTGTTGTCATGTCATCCGAGAACGAACCTACAAGAATCAACATGTGCTTGGAGGAAGGGGCAGAGGAATTCCTTTTGAAGCCTCTTCAACTATCAGACGTCAAGAAGCTAGAGCCGCACCTTCAAAAGTCCCTCAGCCGATCTTCTGCAGAAACAAAGGAGGATGAAACCGACGGAAACGGAATCGGAATCGCTACTTCCGAAGCCGTTGACGAAGAAAACAACTCGACAGAAGACAGTAGCAAGAACGACAGTAACAATACCTTCAGCAAGAGAAAAGCCGCGAATCCAGAACCATCCGAAAGACGACCAAAACTGAAAGAACAACAAGCTGCAGCCGCAGTATAA 696 44.97 MELKADVAEVQQVQQHFHVLAVDDSLIDRKLLEKLLRISSCEAVTCVESGDKALRYLGLLDDLDKFSSSAASFSSQQLSHQQQVKVNLIMTDYCMPGMTGYDLLKRLKGSSRKDIPVVVMSSENEPTRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLSRSSAETKEDETDGNGIGIATSEAVDEENNSTEDSSKNDSNNTFSKRKAANPEPSERRPKLKEQQAAAAV 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35001365 35004196 + Maker00008553 Lcy10g1232 644743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1232 231 Gene3D - 18 230 - -
Lcy10g1232 231 SMART REC_2 17 154 IPR001789 GO:0000160(InterPro)
Lcy10g1232 231 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 222 IPR045279 GO:0009736(InterPro)
Lcy10g1232 231 ProSiteProfiles Response regulatory domain profile. 18 158 IPR001789 GO:0000160(InterPro)
Lcy10g1232 231 MobiDBLite consensus disorder prediction 196 210 - -
Lcy10g1232 231 Pfam Response regulator receiver domain 67 151 IPR001789 GO:0000160(InterPro)
Lcy10g1232 231 MobiDBLite consensus disorder prediction 156 231 - -
Lcy10g1232 231 CDD REC_typeA_ARR 19 153 - -
Lcy10g1232 231 SUPERFAMILY CheY-like 17 152 IPR011006 -
Lcy10g1232 231 MobiDBLite consensus disorder prediction 156 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1232 Lcy-Chr10:35001365 Lcy5g0961 Lcy-Chr5:17041208 1.21E-51 dispersed
Lcy10g1232 Lcy-Chr10:35001365 Lcy7g0695 Lcy-Chr7:6447304 2.26E-47 wgd
Lcy10g1232 Lcy-Chr10:35001365 Lcy9g1560 Lcy-Chr9:40729183 2.27E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18982 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1232 K14492 - csv:101216267 275.018