Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1238 ATGTCGGAAACAATTGCAGTCATGGACGTTGACGACGACAATGGCAACAACGAAGCTGAAAAGTCCGTCAAGGGCAAAAATGTCGCCAGTCCTGCCGCCGCACCCGACGGCAAAGCAATACCCTGGGTTGAGAAGTTCCGGCCTAAGTCTCTCGCTGATGTTGCTGCTCATCGTGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAACAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTACTGGATGAGGCAGATGCCATGACTAAAGACGCACAATTTGCTTTACGTAGAGTAATTGAGAAATATACGAAAAATACAAGGTTTGCTCTTATCTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGGTTTCGATTTGCTCCCCTTGATAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAGCAGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTATGCACAGGAAATCCAATGCCCAAAGACATAGAGCAAGTATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTCAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTATGTTTGTTTTTAAGATCAAGATGCCACCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGAATGAGTTTCGGATGCAACGACAAGTTACAACTCGGATCGCTCATCTCATCTTTCACTCGAGCTAGATCTGCACTCGTTGGTGCTGCAGAGTAG 1092 43.96 MSETIAVMDVDDDNGNNEAEKSVKGKNVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQVSFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPPDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVGAAE 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35055785 35061965 + Maker00008340 Lcy10g1238 644749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1238 363 CDD AAA 60 198 - -
Lcy10g1238 363 Pfam ATPase family associated with various cellular activities (AAA) 76 198 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g1238 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Lcy10g1238 363 FunFam Replication factor C subunit 5 201 263 - -
Lcy10g1238 363 Gene3D - 36 198 IPR027417 -
Lcy10g1238 363 FunFam Replication factor C subunit 5 34 199 - -
Lcy10g1238 363 Gene3D - 264 360 - -
Lcy10g1238 363 SMART AAA_5 72 202 IPR003593 GO:0016887(InterPro)
Lcy10g1238 363 Gene3D - 202 263 - -
Lcy10g1238 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lcy10g1238 363 CDD HLD_clamp_RFC 203 261 IPR047854 -
Lcy10g1238 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 355 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Lcy10g1238 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 258 IPR027417 -
Lcy10g1238 363 FunFam Replication factor C subunit 5 264 361 - -
Lcy10g1238 363 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1238 K10756 - - csv:101217230 691.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1238 Lcy-Chr10:35055785 Lcy6g1987 Lcy-Chr6:42308752 4.21E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g244 . . . . Bpe02g00056 . . . Cmo04g02487 Cmo15g00675 . . . . Sed03g0420 . . Bhi04g01892 Tan11g1257 Cmetu03g1930 . Hepe02g2711 . Lcy10g1238 Cla08g00608 Cam08g1021 Cec08g0611 Cco08g0722 Clacu08g0732 . Cre08g0540 . . Cone17ag1292 Cone20ag0436 . . . Cme03g00527 . Blo18g00180 Bda11g00726 Bda13g01478 . Bpe14g00388 Bma01g00807 Bma02g00213 . . . . . Car04g02301 Car15g00613 Cpe01g02062 . . . . . . . . . . . . . . . Lsi08g00447 . Chy03g00359 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1462 . 102 791 Core DNA Replication Machinery Family AT4G14700 66.2 1.6e-265 912.9
Lcy13g0853 . 521 1078 Core DNA Replication Machinery Family AT4G14700 65.9 5.9e-215 745.0
Lcy11g0308 . 52 573 Core DNA Replication Machinery Family AT4G14700 64.1 3.5e-191 666.0
Lcy11g0309 . 102 270 Core DNA Replication Machinery Family AT4G14700 69.7 2.7e-66 251.1
Lcy6g1462 . 102 791 Core DNA Replication Machinery Family AT4G12620 67.8 2.0e-271 932.6
Lcy13g0853 . 521 1067 Core DNA Replication Machinery Family AT4G12620 68.3 2.3e-219 759.6
Lcy11g0308 . 52 573 Core DNA Replication Machinery Family AT4G12620 65.8 1.5e-194 677.2
Lcy11g0309 . 102 270 Core DNA Replication Machinery Family AT4G12620 71.7 4.4e-69 260.4
Lcy13g2044 . 49 410 Core DNA Replication Machinery Family AT2G37560 66.0 1.6e-140 496.5
Lcy12g1380 . 15 441 Core DNA Replication Machinery Family AT5G16690 53.1 5.7e-121 432.6
Lcy7g1035 . 9 425 Core DNA Replication Machinery Family AT2G01120 57.0 3.9e-133 472.2
Lcy13g0701 . 307 834 Core DNA Replication Machinery Family AT4G29910 55.8 6.0e-166 581.6
Lcy7g1942 . 39 318 Core DNA Replication Machinery Family AT1G26840 64.4 2.6e-93 339.3
Lcy8g0029 . 1 226 Core DNA Replication Machinery Family AT1G26840 66.2 1.7e-79 293.5
Lcy4g0064 . 1 808 Core DNA Replication Machinery Family AT1G79150 59.5 1.7e-249 859.8
Lcy11g0915 . 10 962 Core DNA Replication Machinery Family AT1G44900 73.5 0.0e+00 1336.6
Lcy1g0195 . 1 599 Core DNA Replication Machinery Family AT5G46280 78.4 5.2e-266 914.1
Lcy1g0019 . 6 222 Core DNA Replication Machinery Family AT5G46280 52.5 3.4e-60 230.3
Lcy3g0984 . 1 846 Core DNA Replication Machinery Family AT2G16440 73.4 0.0e+00 1182.9
Lcy4g2051 . 1 736 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.4
Lcy1g0019 . 3 297 Core DNA Replication Machinery Family AT2G07690 50.2 1.7e-72 271.6
Lcy7g1690 . 15 183 Core DNA Replication Machinery Family AT2G07690 62.7 1.0e-61 235.7
Lcy5g1003 . 15 171 Core DNA Replication Machinery Family AT2G07690 64.3 1.4e-61 235.3
Lcy1g0019 . 1 490 Core DNA Replication Machinery Family AT5G44635 70.1 1.3e-191 667.5
Lcy1g0020 . 1 305 Core DNA Replication Machinery Family AT5G44635 78.4 5.2e-137 486.1
Lcy3g1810 . 11 741 Core DNA Replication Machinery Family AT4G02060 83.6 0.0e+00 1210.3
Lcy8g1760 . 63 463 Core DNA Replication Machinery Family AT2G29680 62.3 6.5e-143 505.0
Lcy13g0711 . 63 325 Core DNA Replication Machinery Family AT2G29680 66.5 3.6e-101 366.3
Lcy8g1760 . 68 433 Core DNA Replication Machinery Family AT1G07270 64.8 1.8e-134 476.9
Lcy13g0711 . 37 326 Core DNA Replication Machinery Family AT1G07270 63.4 4.4e-101 365.9
Lcy3g1361 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 1.3e-259 892.9
Lcy5g0260 . 12 792 Core DNA Replication Machinery Family AT3G09660 74.1 0.0e+00 1121.7
Lcy4g0233 . 10 357 Core DNA Replication Machinery Family AT2G14050 71.1 3.0e-145 513.1
Lcy4g0231 . 5 222 Core DNA Replication Machinery Family AT2G14050 75.1 1.3e-95 348.2
Lcy8g1254 . 1 445 Core DNA Replication Machinery Family AT2G20980 52.3 4.5e-115 412.1
Lcy9g1541 . 1 958 Core DNA Replication Machinery Family AT1G77320 50.2 1.4e-258 890.2
Lcy3g2057 . 1 235 Core DNA Replication Machinery Family AT1G80190 59.7 1.7e-70 263.1
Lcy2g2423 . 148 333 Core DNA Replication Machinery Family AT3G12530 57.5 3.3e-55 211.8
Lcy10g2194 . 1 186 Core DNA Replication Machinery Family AT1G19080 68.3 1.7e-69 259.6
Lcy10g2194 . 1 186 Core DNA Replication Machinery Family AT3G55490 68.3 1.7e-69 259.6
Lcy3g0553 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy3g0554 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy13g1039 . 231132 231295 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy11g1982 . 1 164 Core DNA Replication Machinery Family AT5G49010 61.4 1.2e-49 193.7
Lcy8g0834 . 1 1558 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1764.6
Lcy7g0076 . 38 680 Core DNA Replication Machinery Family AT1G67630 56.7 1.8e-200 696.4
Lcy3g1510 . 1 519 Core DNA Replication Machinery Family AT1G67320 62.4 3.1e-182 635.6
Lcy9g0019 . 68 497 Core DNA Replication Machinery Family AT1G67320 65.2 1.8e-166 583.2
Lcy2g2216 . 472 791 Core DNA Replication Machinery Family AT5G41880 63.9 2.8e-121 433.0
Lcy9g0348 . 30 357 Core DNA Replication Machinery Family AT5G41880 62.3 3.4e-119 426.0
Lcy1g1200 . 1 687 Core DNA Replication Machinery Family AT5G63960 74.3 4.5e-306 1048.1
Lcy5g0600 . 1 421 Core DNA Replication Machinery Family AT2G42120 76.7 7.2e-199 690.6
Lcy3g1510 . 1 519 Core DNA Replication Machinery Family AT1G67320 62.4 3.1e-182 635.6
Lcy9g0019 . 68 497 Core DNA Replication Machinery Family AT1G67320 65.2 1.8e-166 583.2
Lcy8g1984 . 55 2378 Core DNA Replication Machinery Family AT1G08260 64.0 0.0e+00 2844.7
Lcy5g2343 . 5 2065 Core DNA Replication Machinery Family AT1G08260 64.7 0.0e+00 2698.3
Lcy8g1984 . 63 2485 Core DNA Replication Machinery Family AT2G27120 60.9 0.0e+00 2817.0
Lcy5g2343 . 28 2184 Core DNA Replication Machinery Family AT2G27120 62.1 0.0e+00 2676.4
Lcy2g2119 . 7 518 Core DNA Replication Machinery Family AT5G22110 50.4 8.2e-143 504.6
Lcy3g0749 . 1 278 Core DNA Replication Machinery Family AT5G22110 69.4 1.8e-105 380.6
Lcy8g2029 . 290 1066 Core DNA Replication Machinery Family AT5G22010 69.9 2.0e-299 1025.8
Lcy6g1987 . 1 368 Core DNA Replication Machinery Family AT1G63160 82.4 7.2e-167 583.9
Lcy1g1725 . 1 345 Core DNA Replication Machinery Family AT5G27740 78.3 8.8e-155 543.9
Lcy9g1544 . 41 361 Core DNA Replication Machinery Family AT1G21690 75.7 1.1e-138 490.3
Lcy10g1238 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.6 1.6e-154 543.1
Lcy4g2255 . 26 680 Core DNA Replication Machinery Family AT2G06510 62.4 1.2e-244 843.2
Lcy6g2277 . 81 747 Core DNA Replication Machinery Family AT2G06510 52.5 2.4e-200 696.0
Lcy2g0510 . 1 638 Core DNA Replication Machinery Family AT5G08020 66.7 7.5e-247 850.5
Lcy6g2277 . 57 856 Core DNA Replication Machinery Family AT5G45400 52.7 2.1e-234 809.7
Lcy4g2255 . 210 682 Core DNA Replication Machinery Family AT5G45400 59.4 3.0e-169 593.2
Lcy2g0510 . 1 633 Core DNA Replication Machinery Family AT5G61000 65.8 1.4e-243 839.7
Lcy6g2277 . 57 842 Core DNA Replication Machinery Family AT4G19130 56.0 1.6e-233 806.6
Lcy2g2397 . 5 113 Core DNA Replication Machinery Family AT5G26680 76.0 9.3e-47 185.3
Lcy11g1151 . 1 298 Core DNA Replication Machinery Family AT2G25100 66.8 2.6e-114 409.1
Lcy8g1937 . 1 776 Core DNA Replication Machinery Family AT1G08130 63.6 2.5e-279 958.7
Lcy8g1937 . 197 776 Core DNA Replication Machinery Family AT1G49250 66.3 1.3e-228 790.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006625 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38