Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1240 ATGTCGATCTTTGAGTATAATGGAAGTGCCGTAGTTGCGATGGTGGGGAAGAATTGCTTTGCCATTGCTAGTGATCGTAGGCTTGGAGTTCAGCTGCAGACCATTGCCACAGACTTCCAGAAAATTTACAGGATTCATGATAAGCTATTTCTTGGCCTTTCGGGCCTCGGTACCGATGCTCAGACACTGTATCAACGGCTTGTCTATCAGCACAAACTTTACCAGCTTCGAGAAGAGAGGGACATGAAGCCTGAGACATTTGCTAGCCTAGTCTCAGCTCGTCTTTATGAGAAAAGGTCAGACAAAAAACTCATCAATTTTCTTAACTGTAGATTTGGTCCATACTTCTGCCAGCCTGTAATTGCTGGATTGAGTGACGAAGACAAACCCTTTATTTGCACGATGGATTCTATTGGGGCTAAAGAGCTTGCTAAGGACTTTGTTGTTTCTGGTACTGCATCAGAGTCCCTTTATGGTGCTTGTGAGGCAATGTTTAAACCTGACATGTGTGTTAGCAGTTTGGGTCAGTCAATTTTCGACCAAATGTGGATACCAACAGTTGAATGTAAGATATCCAAAATAGCTGAGCAGCTGATAAGATGTGCTAAAACTGAGCCAACTCAACCAAAATTCGAAATCTGTGACTCACTAGAAGAGATCATGGGGGAAGATAAGCAAGAAGAGAATGAGAGTGAGATAGAGGGGTGGGGATCTGCTATTGAGATTTCTGGAGAGGAGATGGCAAATGAACCTGAGGAATTATTTGAAACCATCTCTCAAGCGCTGCTGTCTTCTGTCGATCGGGACTGTTTGAGTGGATGGGGAGGGCATGTCTATGTTGTTTCTCGTGCAGCCTCTGACATGAACGAAGAGCAAGAGGATAAGCAACTTCCCCAAAGGATTTCCCTTGCTTATGTGGAACAGGTGAACTCAGATTTTATCATGGCCTTGGCAATGCAGCAGCAGGACCACGAGAGGGCCTATACAATGCTCGAGACCATTGAAAGTGACAGCGACGAAGAAGAAAGTTCAGATTCCAACAGCAACAATGGTCTCGACACCTATGATTTCTTGCAAAGCCAAGAACTTCGTTGTGCCCGGTGGGATTTTCTGGCAGACGATGAGGAGACTAACGATGAAAATGAAGATATGGACGAAGACGAAGGGGATTTTGAGGATTTTGATTTGGATGAGCTAAGCTATGAAGAGTTGATTGCATTAGGGGAGTTCATTGGAGAAGAAAAGAGGGGGCTACCGATGAACGAAATACCTTCGTGCTTGCACTCGAGCAAGTTTCGAACAATCGAAAACAGAAGCGGTATAGATCGGTGTGTGATTTGCCAAGTTGAATATGAAGATGGTGAAGAATTGGCTTCTCTTCCTTGTGAGCATCCTTACCATTCAGAGTGTATAAGCAAATGGCTTCAAGTCAAAAGGGTTTGTCCAATATGTGGTACAGAAGTTTCATCCCCAAAGGCTTCTAAAAATGCATAA 1494 44.04 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQKIYRIHDKLFLGLSGLGTDAQTLYQRLVYQHKLYQLREERDMKPETFASLVSARLYEKRSDKKLINFLNCRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMCVSSLGQSIFDQMWIPTVECKISKIAEQLIRCAKTEPTQPKFEICDSLEEIMGEDKQEENESEIEGWGSAIEISGEEMANEPEELFETISQALLSSVDRDCLSGWGGHVYVVSRAASDMNEEQEDKQLPQRISLAYVEQVNSDFIMALAMQQQDHERAYTMLETIESDSDEEESSDSNSNNGLDTYDFLQSQELRCARWDFLADDEETNDENEDMDEDEGDFEDFDLDELSYEELIALGEFIGEEKRGLPMNEIPSCLHSSKFRTIENRSGIDRCVICQVEYEDGEELASLPCEHPYHSECISKWLQVKRVCPICGTEVSSPKASKNA 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35074010 35079549 - Maker00008564 Lcy10g1240 644751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1240 497 ProSitePatterns Proteasome beta-type subunits signature. 12 59 IPR016050 GO:0005839(InterPro)|GO:0051603(InterPro)
Lcy10g1240 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 497 IPR013083 -
Lcy10g1240 497 SMART ring_2 444 484 IPR001841 -
Lcy10g1240 497 ProSiteProfiles Zinc finger RING-type profile. 444 484 IPR001841 -
Lcy10g1240 497 Pfam Ring finger domain 443 484 IPR001841 -
Lcy10g1240 497 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 9 296 IPR029055 -
Lcy10g1240 497 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 180 IPR029055 -
Lcy10g1240 497 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 374 492 IPR043312 -
Lcy10g1240 497 FunFam E3 ubiquitin ligase BIG BROTHER-related 410 491 - -
Lcy10g1240 497 CDD proteasome_beta_type_3 6 283 IPR033811 GO:0019774(InterPro)|GO:0043161(InterPro)
Lcy10g1240 497 SUPERFAMILY RING/U-box 443 491 - -
Lcy10g1240 497 Pfam Proteasome subunit 7 170 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1240 K02735 - - csv:101218171 301.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1240 Lcy-Chr10:35074010 Lcy7g0831 Lcy-Chr7:8177383 3.83E-27 dispersed
Lcy10g1240 Lcy-Chr10:35074010 Lcy3g1913 Lcy-Chr3:46355126 4.79E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g241 . . . . . . . . Cmo04g02489 . . . . . Sed01g3107 . . Bhi04g01887 Tan11g1255 Cmetu03g0877 . Hepe02g2233 . Lcy10g1240 Cla08g00611 Cam08g1025 Cec08g0614 Cco08g0726 Clacu08g0735 . Cre08g0543 . . . . . . . . . Blo18g00179 . Bda01g01452 Bpe02g01648 . . . . . . . . Car04g02303 . . . . . . . . . . . . . . . . . Lsi08g00451 . Chy03g00769 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009335 0 1 0 1 1 1 0 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 34