Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1244 ATGGAGGACGGGATGAAAGCACACGTTGAGACGGCTAGATCCGACGAGATCGTGAGAGCAGAAACCAGATTTGGCGTCGTCGGAGCCGACAAGGACTATGTCGGAGAAGAAGAACTTTTGAGGTTGTCGGCGGCCGGCGTTAGCGGTGGCTGTGGCCGGCGACGGCTGACGGAAGAAGAAGGAAGAAGGCCGACGGAGAAGAAGAAGAATTGGAGGCCGAAGGAGAAGAAGAAAAAGGTGTTTTTATACACAACCACATTGAAGAGAGAGAGAGAAGAAATGGCAAGTCGGCAGAAGGAAGCTCAGATGAGTACGGCGGCGACACCGTCTTTTGGTGGTGGCAGCAACCGCATAGCGGCAGTGACGACCACTCCGGCCAACGCCGTCAAGCCACAAAATCACCATGAAGAACAAACCACCACGCATCAGAAACCTGGATGGAGAAAATTTCTTTCACACGTTGGCCCTGGCTTCCTCGTCTCATTGGCTTACCTTGATCCCGGCAACTTGGAAACCGATTTGCAGGCTGGAGCTAATCACGGATACGAGCTTTTGTGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATCCAATCTCTCGCTGCAAATCTCGGCGTAAGCACTGAAGTTTGCAAAGCCGAATATCCCAAATTTGTGAAGTACTTCCTTTGGTTGCTGGCTGAAGTTGCTGTAATAGCCGCCGATATTCCAGAAGTGATAGGAACGGCCTTTGCCCTGAATATACTATTCCATATTCCAGTTTGGGCGGGAGTTCTTCTCACCGGATTAAGCACCCTCTTGCTCCTTGGACTCCAGAGATATGGGGCGAGGAAGCTGGAATTGCTGATAGCAGTTTTGGTATTCGTAATGGCGGCGTGTTTCTTCGGGGAAATGAGTTACGTTAAGCCGCCGGCGACCGGCGTTTTGAAAGGAATGTTTGTGCCGAAACTCAACGGCCAAGGAGCCACCGCCGACGCCATTGCTCTCCTCGGCGCTCTCGTTATGCCGCACAATCTCTTTCTTCATTCGGCTCTCGTGCTCTCTAGGAAGGTGCCAAATTCCGTCCGCGGTATCAACGACGCGTGCAGGTACTTCCTAATAGAGAGCGGATTTGCACTGTTCGTAGCATTTTTAATAAACGTGGCCGTCGTTTCAGTTTCCGGCACCGTTTGTACCGTCGGAAAAATCTCCGAAACCACCGCCGATCAGTGCTCCGACATAACCCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCGAGCTCCACTATTTACGCCATTGCGTTGCTCGCCTCTGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGACAATTCATCATGCAGGGGTTTTTGGACTTGAAAATGAAAACATGGGTGAGGAACCTTATGACGAGGTCCATTGCCATTACGCCCAGTCTCATTGTCGCCATTATCGGTGGACCTCAGGGAGCTGGACGTCTCATCATTATTGCTTCGATCATTGTAATCTCATGGATATTGGGCCTGGGAATCATCGGCATCAACATCTACTATCTGAGTACGGGCTTCGTGGGCTGGCTGATCGACAACAATTTACCAAAAGTTGCAAATGTATTCATTGGGATCGTTGTGTTTCCATTGATGGCCTTGTACATTCTTGCCGTTATTTACCTAACGTTTCGAAAGGACAGGGTTGTCACTTACATTGAGCCCGAAAAGTACGACCCTATGGCCCAAGCCCATTTGGAAGGTGGGCTGAATAATTCTTTTGGGCCTGGTGACGTCGCCCCGGTCCCTTTCAGAGAGGACTTGGCCCATATCCCACTTCCGGAGTAG 1830 50.77 MEDGMKAHVETARSDEIVRAETRFGVVGADKDYVGEEELLRLSAAGVSGGCGRRRLTEEEGRRPTEKKKNWRPKEKKKKVFLYTTTLKREREEMASRQKEAQMSTAATPSFGGGSNRIAAVTTTPANAVKPQNHHEEQTTTHQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGYELLWVVLIGLIFALIIQSLAANLGVSTEVCKAEYPKFVKYFLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAVLVFVMAACFFGEMSYVKPPATGVLKGMFVPKLNGQGATADAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALFVAFLINVAVVSVSGTVCTVGKISETTADQCSDITLNSASFLLQNVLGKSSSTIYAIALLASGQSSSITGTYAGQFIMQGFLDLKMKTWVRNLMTRSIAITPSLIVAIIGGPQGAGRLIIIASIIVISWILGLGIIGINIYYLSTGFVGWLIDNNLPKVANVFIGIVVFPLMALYILAVIYLTFRKDRVVTYIEPEKYDPMAQAHLEGGLNNSFGPGDVAPVPFREDLAHIPLPE 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35098624 35106701 - Maker00008711 Lcy10g1244 644755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1244 609 MobiDBLite consensus disorder prediction 99 115 - -
Lcy10g1244 609 NCBIfam Nramp family divalent metal transporter 155 498 - -
Lcy10g1244 609 MobiDBLite consensus disorder prediction 53 68 - -
Lcy10g1244 609 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 148 507 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 134 500 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 Hamap Divalent metal cation transporter MntH [mntH]. 131 521 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 PRINTS Natural resistance-associated macrophage protein signature 224 250 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 PRINTS Natural resistance-associated macrophage protein signature 465 482 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 PRINTS Natural resistance-associated macrophage protein signature 327 350 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 PRINTS Natural resistance-associated macrophage protein signature 252 271 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 PRINTS Natural resistance-associated macrophage protein signature 277 298 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 PRINTS Natural resistance-associated macrophage protein signature 437 456 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 Pfam Natural resistance-associated macrophage protein-like 171 500 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy10g1244 609 MobiDBLite consensus disorder prediction 47 74 - -
Lcy10g1244 609 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1244 Lcy-Chr10:35098624 Lcy12g0522 Lcy-Chr12:6358353 5.67E-172 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1244 K21398 - csv:101219356 843.188