Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1245 ATGTCCGCCCATAATCGCCGCCCGTCGTTCTCGTCGTCGACGTCGTCGTCGTTGGCTAAACGACAAGCGTCGTCGGCTTCCTCGTCCGACAACGTCGGGAAGGTTATGGCGGTTCCGCCACACTTGGCGAAGAAGCGAGCTCCACTTGGTAACCTGACGAATCTTAGGAATGTGTCTCATAGTGCTGCGAAAAGCTCTGTTCCGCCTGCTGTTATGGTACCTTGTGCAACCAAAGCTATCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCGTAGCTCAAACTTGCCAGCGAACAATACAACCACATTGCAGCTCGATGTCAAAATTACAAGTGCAGTTGCCCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCCACCGCCATCTCTAGTTGTATGGATGTCTCTCCGACTAAATCAGATGGAGTTTCAGTTTCTTTAGATGAAACTATGTCTACTTGTGATTCTTTCAAGAGTCCCGATGTCGAGTACATGGATAATAATGATGTTCCAGCAGTTGATTCCGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCATGCATCAATTAATAGTCAGGCACCAATTAAAGGTAGTATATGCAATAGAGATGTACTTGCAGACATGGAAACAGATGGTGATATCATTGATGTCGATACCGATTTCATGGATCCCCAACAATGTGCTACAATTGCTTGTGATATTTACAAGCATTTGCGAGCGTCTGAGGCAAAGAAAAGGCCTTCTACAGACTTCATGGAAAAAATTCAGAAAGATATAAATTCAAATATGCGTGCTATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCAGATACTCTATATTTGACAGTGAACTACATTGATCGATACCTATCCGGAAATTCGATGGATCGACAACGGTTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTATATAACTGATAACACATATTTCAAAGAAGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACAGCTCCAACACCGAAATGTTTCTTAAGACGATTTGTTCGTGCTGCTCAAGGTGCCGATGAGCTTTCATCAATGCAGTTGGAGTGCTTGTCCAACTTCCTTGCTGAATTATCTCTTTTAGAATATGGTATGCTCTGCTACGCCCCGTCACTCGTAGCTGCCTCGGCGATTTTCTTGGCGAAGTTCATTCTTCTCCCAACTAAGAGACCATGGAACTCCACCTTGCAGCATTATACACATTATCAACCATCCGATCTCGTCGACTGCGTTAAAGATTTACATCGTCTCTGCTGTAACCATAATTCTAGCTTACCTGCTATCAGAGAGAAATACAGCCAGCATAAGTACAAACACGTGGCAAAGAAGTACTGCCCTCCGACGATACCGCCGGAGTTCTTCCAGAATCAAACACAGTAG 1503 43.91 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNLRNVSHSAAKSSVPPAVMVPCATKAIKARKSSPARTRSSNLPANNTTTLQLDVKITSAVAPSNVTAFSRTDATAISSCMDVSPTKSDGVSVSLDETMSTCDSFKSPDVEYMDNNDVPAVDSVERKTKSSLCISGHASINSQAPIKGSICNRDVLADMETDGDIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGADELSSMQLECLSNFLAELSLLEYGMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35131578 35137912 + Maker00008469 Lcy10g1245 644756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1245 500 ProSitePatterns Cyclins signature. 267 298 IPR048258 -
Lcy10g1245 500 Pfam Cyclin, C-terminal domain 365 484 IPR004367 -
Lcy10g1245 500 SUPERFAMILY Cyclin-like 365 490 IPR036915 -
Lcy10g1245 500 CDD CYCLIN_AtCycA-like_rpt2 365 478 - -
Lcy10g1245 500 FunFam Mitotic cyclin 6 250 350 - -
Lcy10g1245 500 MobiDBLite consensus disorder prediction 1 34 - -
Lcy10g1245 500 SMART Cyclin_C_2 365 487 IPR004367 -
Lcy10g1245 500 PANTHER CYCLINS 218 475 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy10g1245 500 Gene3D - 250 363 - -
Lcy10g1245 500 Gene3D - 236 483 - -
Lcy10g1245 500 CDD CYCLIN_AtCycA_like_rpt1 226 361 - -
Lcy10g1245 500 FunFam Cyclin A1 352 483 - -
Lcy10g1245 500 SMART cyclin_7 272 356 IPR013763 -
Lcy10g1245 500 SMART cyclin_7 369 457 IPR013763 -
Lcy10g1245 500 MobiDBLite consensus disorder prediction 1 32 - -
Lcy10g1245 500 PIRSF Cyclin_A_B_D_E 5 493 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lcy10g1245 500 Pfam Cyclin, N-terminal domain 236 363 IPR006671 -
Lcy10g1245 500 SUPERFAMILY Cyclin-like 226 362 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1245 Lcy-Chr10:35131578 Lcy3g2082 Lcy-Chr3:47773646 1.42E-97 dispersed
Lcy10g1245 Lcy-Chr10:35131578 Lcy9g1815 Lcy-Chr9:43278052 1.57E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1245 K06627 - csv:101221569 908.672