Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1246 ATGCTGCAGAGAGATTCGAGAATCGAGCTCCAATGGCTTTGGATCGAAATTGAAGTGCCGAAAGCCGAAGAGAAACGAAATGGGGATGTGGGTTCGTCTAGACGACAGACGAGTCATAATCTGACCGGACAAACGATTGTCACCGACCCAATCCTGCTTTTCCACGTCAGCAAACCTCCGAAATTAGTAGGACCCACTTATCTGCCAACTCTTCCTGACCACAGCGCCTTTATCTTCGCGCCTTTCCCTGCTCTCTCTACTGTGACTTCACTTCGCTTCGCCATGCCTCTGGTTCTTCTCTCTTTCCTTCTCCAGTTTTCTATTTCTTCTCTCCTTCCGCCGTCGTCGGCGGCGACGTCAGGTGGCGACGTCTCCAGCGGCAACAGCATAGTCTTCACCACCCTTGGCAGACCCCAATATGCCTTCGATGTCTTTACCCTCCCGGCTGACGGCACTGGTTCCCCTTCTGCAGCGGACGAAACCCGAATCACCGACGGCCAATCCGTCAATTTCAATGGCTATTTCCCTTCCTCCTCGTCATCGGCCTCGCTTCTCTCTCTTTTAGTGAACCAGTCGCAGTCCTTACGGCCGGATTTGGAACTCGTCTATGTCACGGAGAGAAACGGAATCTCCAGTATCTTCTACGATGCTATTTTCGGTGGTACCGGAATTAGCGTCAGACGGCGGTCGGAGCTCGAGATTCCTCATCGATTGCAAATTTCTCTGTTGGATGATGAGCGGAAGCAGGAAGTTAGGGTTTCATTCAAAGATCGGCCGAGTTTAAGCGGGGAGAACTTGGTGTATGTGTCGACTCACGAGGACCCGGGCAAGTCAAGAACGAGTTGGGCGGCAGTGTACTCAAGGAGTTTGAAATCGGGTCTAACTCGGCGATTGACGCCCTATGGAATCGCCGATTTTAGCCCCTCTGTTTCGCCGTCTGGGGTTTGGACGGCGGTGGCTTCTTACGGCGAGAAGGGCTGGGCCGGCGACGTTGAGGACCTAAATACGGATTTATACATCTTCCTAACTCGCGACGGAACTCGCCGAGTTAAAGTCGTCGAACACGGTGGCTGGCCGTGCTGGGCCGACGATTCGACTCTATATTTTCACCGGCGAGGCGATGACCAGTGGCTGAGTATATACAGAGCGATTCTACCGAGTCATGGAGAAATTTCTCCCGATTCAGTGATAATCGAACGACTCACTCCACCTGGTTTGCACGTGTTCACTCCGGCCAGTTCTCCGACGAACAAAAACCTCATCGCCGTCGCGACGAGAAGACCGGATTCATCATATCGCCATATAGAGTTGTTCAACCTCGTCACCGGAGAGTTCAAGGAGTTGACAAAAGCTGTTTCGCCTAATTCTCACCACTTCAATCCGTTCATCTCTTCTGATGGAATTCGTATCGGATACCACAAGTGCAGAGGTGACGGCAATGGAAGAAAAAACAACCCCCTATTGTTCGAGAACGTTCGTAGCCCTGTTCCTAATTTATCCTTATTCAGAATCGCCGGTTCTTTTCCCTCCTTTTCGCCTGCCGGTGACCGTATGGCCTTCGCGAACTTCCCCGGATTATACGTCGTCAATCGGGACGGTTCCAATCAACGGCAGGTTTACCCAGGCGCGGCGTTCTCGTCGGCGTGGGATCCAGTACGAGAAGGAGTAGTATACACCAGCGCCGGCCCAGATTTTGCGCCGGTGAGTACTGAGGTCGATATCATTTCAATCAACGTCGATGGTGATGAGGGAAATTTCAAGAAGCTGACGATGGACGGTAAAAACAACGCCTTCCCATCGCCGTCTCCCGATGGGAAATGGATTGTTTTCCGGTCGGGTCGCAGCGGTTACAAGAATCTGTACATAATGGACGCCGTCGACGGCGAGAGCAAAGGGCTCAGGCGGCTGACGGAGGGCCGGTGGTCGGATACGATGTGCAGTTGGTCGCCGGACGGCGATTGGATTGCATTTGCTTCGGACCGAGACAGTCCCGGTGCCGGAAGTTTCGATCTGTTCTTGATCCACCCGAACGGAACCGGGTTGAGGAAGCTGTTTCAAAGCGGGTCGTCGGGTCGGGCGAACCACCCGAGTTGGCGTCCGGATGGGAAGGTTCTAGTGTTCACTACGGACAATGCGGGGATATCGGCAGAGCCAATCTCGAACTCACATCACTATCAACCCTACGGTGAGATCTACTCCATCAATTTGGACGGCTCTGATCTTCAGAGGCTGACTCATAACTCCTACGAGGATGGGACCCCCACGTGGAGCCCACGTTACATCAGCCCTGTCGACGTGGAGAGCTCAAATGACGTGGCCCCTTGTGGCTTCGAAGATTGCCACTGGCTCAATCTAAACGAGAAGGCCCACAACGCTATTGGGCCCGCCTTAATCGGGCCTCGATCCAGCCCATAA 2415 53.42 MLQRDSRIELQWLWIEIEVPKAEEKRNGDVGSSRRQTSHNLTGQTIVTDPILLFHVSKPPKLVGPTYLPTLPDHSAFIFAPFPALSTVTSLRFAMPLVLLSFLLQFSISSLLPPSSAATSGGDVSSGNSIVFTTLGRPQYAFDVFTLPADGTGSPSAADETRITDGQSVNFNGYFPSSSSSASLLSLLVNQSQSLRPDLELVYVTERNGISSIFYDAIFGGTGISVRRRSELEIPHRLQISLLDDERKQEVRVSFKDRPSLSGENLVYVSTHEDPGKSRTSWAAVYSRSLKSGLTRRLTPYGIADFSPSVSPSGVWTAVASYGEKGWAGDVEDLNTDLYIFLTRDGTRRVKVVEHGGWPCWADDSTLYFHRRGDDQWLSIYRAILPSHGEISPDSVIIERLTPPGLHVFTPASSPTNKNLIAVATRRPDSSYRHIELFNLVTGEFKELTKAVSPNSHHFNPFISSDGIRIGYHKCRGDGNGRKNNPLLFENVRSPVPNLSLFRIAGSFPSFSPAGDRMAFANFPGLYVVNRDGSNQRQVYPGAAFSSAWDPVREGVVYTSAGPDFAPVSTEVDIISINVDGDEGNFKKLTMDGKNNAFPSPSPDGKWIVFRSGRSGYKNLYIMDAVDGESKGLRRLTEGRWSDTMCSWSPDGDWIAFASDRDSPGAGSFDLFLIHPNGTGLRKLFQSGSSGRANHPSWRPDGKVLVFTTDNAGISAEPISNSHHYQPYGEIYSINLDGSDLQRLTHNSYEDGTPTWSPRYISPVDVESSNDVAPCGFEDCHWLNLNEKAHNAIGPALIGPRSSP 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35135673 35138187 - Maker00008863 Lcy10g1246 644757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1246 804 SUPERFAMILY DPP6 N-terminal domain-like 265 591 - -
Lcy10g1246 804 Pfam WD40-like Beta Propeller Repeat 634 672 IPR011659 -
Lcy10g1246 804 Pfam WD40-like Beta Propeller Repeat 594 622 IPR011659 -
Lcy10g1246 804 Pfam WD40-like Beta Propeller Repeat 690 710 IPR011659 -
Lcy10g1246 804 Gene3D - 224 493 IPR011042 -
Lcy10g1246 804 Gene3D - 691 761 IPR011042 -
Lcy10g1246 804 Gene3D - 494 666 IPR011042 -
Lcy10g1246 804 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 112 782 - -
Lcy10g1246 804 SUPERFAMILY DPP6 N-terminal domain-like 508 758 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1246 Lcy-Chr10:35135673 Lcy3g1855 Lcy-Chr3:45718079 3.21E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g228 . . . . . . . . . Cmo15g00667 . . . . Sed03g0428 . . Bhi04g01877 Tan11g1249 Cmetu03g0593 . Hepe02g2220 . Lcy10g1246 Cla08g00617 Cam08g1031 Cec08g0620 Cco08g0732 Clacu08g0741 . Cre08g0549 . . Cone17ag0825 . . . . . . Blo18g00176 . Bda01g01455 Bpe02g01652 . Bma01g00803 . . . . . . . Car15g00607 . . . . . . . . . . . . . . . . Lsi08g00457 . Chy03g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008521 3 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35