Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1258 ATGCGTGGTTTTGGAACTTGGAAGCTGGATGACAGGAGCAAATTCTTCAACAAGTCTCTCCCTTTGGATCTTAGCACCATAGGGGGAAGAAAACCAATACCCAAGATAATGATACAGCTCCAGATGCCTTCCATGGCTATTTCCCCTCATTGGTGTTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCACTAAGGGATATTAAGAAGGTATATTTATTAAGCTGTATCCTCTCCAGTTCTTTCCTGTTTCAGGGTGAAGAGGTGACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCCAAAAAATGTTATTGTGGTTCTTCCCAATGTCGAGGTTATATAGGTGGAGACCCCCTCAATTCTGAGGTCATTATTCAAAGCGACTCAGATGAAGAATTTCCAGAACCGGTGATGCTTCGTGCCGATGGTAGAAGTTGGAACAATAACTTGCCAACTGCAGTTAGTTCATTGGATGGTGCTAAAATGCAACCCTCAGAGAGTATAAGAGGGTTTAGGGAAAAGAGAGATCAAACTATCAATGTTGCTGTCAAGTCAAAGATTTCGGTAGAAAAAGAGGATCCTCTTAAGCTTTCTGCTTCAAAGATTTCAGAAGAAAAAGGGGATCTGCTTAACCTTTCTGCTTCGAAGATTTCAGAAGAAAAAGAGGATCCACTTAATCTTTCTGCTTCGAGGATTTCAGAAGAAAAAGAGGATCCTCTTAACCTTTCTACCTCTACCATTTCACCATTGCACAGTTCATTGGAATTTGAAGACTCAAAGGTAGCATCACCTACTCCTCTGCCGGAAAATACCCAACAGATTGAAGATGTGACGAGCAATGTGTTTGTTGATCAGACGGAAATCTCTCTTGTGGACAATACTGCTGACAAAAACACATGCTCTATTGAGCAGGAGGCAAAATTATTATTTCATGACATTGATGCTCGTAAGAAATCCAAGCTGGATGCTGTTGAAGATAAGCAAGTGTATATAAAGTCATATCCTCGGATGAAAACTCCACGTAAACCAGGATCCATCAAGAAAGGAAAAGTTAGCTCTGTAGAGAAAGTTCAAATAACTAACAAGCCCCAGATTTCGTCCATAAAACCGAAGCGATTGATTGAGGGTTCTCCGGGTAACCGCTTTGAAGCAGTGGAGGAGAAGCTTAATGAACTCCTGGATGCTGAAGGAGGAATTAGCAAAAGAAAAGACGCACCGAAAGGGTACCTAAAGCTTCTTCTTCTGACTGCTGCATCAGGTGCAAGTGCCAGTGGTGAAGCAATTCAGAGCAATCGAGATCTCTCCATGATCCTTGATGCTCTTTTGAAGACAAAATCACGAGTGGTATTGACTGACATAATAAACAAAAATGGTTTGCGGATGCTGCATAATATAATGAAGCAATACAGAAGTGACTTCAAAAAGATTCCTATTCTTCGGAAGCTTTTGAAGTGCTTGATGGGCTTGGTGGACTTGCTAGAGAAGGATATACTATCCAATGCCCTTAAAGGTCTCTACCTAGGTATAACAAGGTTAAAATTAACCATTTACCGCTCGTCTGATGCTCTTATTTTTGGAGCCTATGAAGATAAAGAGTACGAGTATTTGTTGTATCCTTTGTCGGAGGCGGGGGAAGATCTGGATCACATCATACCATCCCAAATGCTGCTGTTTAGAGGGTTATGCCGGCTGACTTCCAAAGCTATATGGAATGATTTTACCGAGAAAACCAGAGAGGATTCTAAAGGACGAATGTTCGATTTTGGAGTCCCTGCCCGTCCGAAGGCTTTTCCTGTAGCTCTTTCTTTTGATGCATGCATGGAAGAGTTAATACCTTGGATTGGATTACGACTAGAGGGTCCTCTTTGGTTGGGTCGTGCTGTTGTATTCTTTTTAGGAGCGCAATCGAGGACCTTGATCATTTGCTCGGGAGTTGTGAGTTTGCAGGGGCTGCGTAAAGGTGCTTTCTCGAGGTCTTCGGTTTTAGCTTTGCCAGTCCTTAAGGTCCTAGAATACTTGGTGACGAGAGAGATACTCACCTCAGAACATATTAATGGAGGTCCTCCTTGCCCTGGAATGGAAAGATTTATTACTTATCTTGGTGGTTTGAGGGAGTCTTTACTGTCACTGACAGAGCATGATGACAAACAGGTACATCAAATTGCCCGAAGTTTTCGAGACAGATGGTTCCCCAGACATATGAGAAAATTTGGTTACTCTGAGAGGGAGGATGGGAGATTGGAAGTGTACAGGGGTTCAAACTGCAGTAGGTTTACAGCATCACACAGCTATCGGCATGATCAGGATTTCAGACCCACAGATGCAATTGATTGTGTTAAGCAGTCAATGCCTACATCTCTGCCAGATGCTCATCCTGCAGAGATCTGTTCTGTGGCTTCTACAGTTGAGCACTCATTGAATGGACAAAAAATTCGTAAGCGCAAGAGTCGATGGGATCAGCCTGCAGACACAAGCTTAGATCTGAGATCCAAGGAGCAGAAGTTTGAATCAACATCGATGCAGCAATTTGATTCCAGCCAATTAGATAGTGTTGGAGTGGCACCAATGTTGATAGACAAGGTAAACAATGATGATAAGGACTCCTCCCTCTCTGATTCTATTGGAGCATGTTGTCGCCAAGACGAAGATATTAGGGCAGACAGTGCAGTGCAAAACACCCTTGAAGATACTCCTCCTGGATTTTCGTCTCCCTTCAATCTCCCCCTGGCTTCCTCGAGTGCTTTTTCAACAGTTTTAGATCCTCCTCGGCAGAGTATTGGCAATTTGAGTTGTGCTTTTTCCACAGTTGGGCATCCACAGGAAAGATTCATTTCTCGCTTGCCTGTGTCCTATGGAATTCCGTTTTCTATTGTTCAGCAATGTGGAACATCCCGTGCAGAGAATCTGGAGTGTTGGGATGTTGCTCCTGGAGTGCCTTTTCATCCTTTTCCACCCTTGCCACCATATCCCCGAGGTCAGAGAGGCCCGCCAACATCTGCCTGTTGTACTACAGTTAAACAATCTGCTCAAGAAGGGCAGGTCAACAGCCATGATTCTCGAACTTCTTTCTCAGAAGAAAGCACTCCTAGTACAAGTACTAATTACCAACAGGATTTGTGCATTCTATCAAACAACCAACAGATGTTGAAACGGGCAAAGGAATCATCGTATGATTTGGGGAGAAGGTACTTTAGGCAGCAAAAGTGGCGTAATACAAAGTTTGGCCCTCCTTGGTTACAGAGAAGGAATCAGTGGGGACATCAGGGGAATTTCAGGGGTGGGGCGAGCTCTATAGGTGATGACAATATACCAAACGAAGAGATAAGTCCATATTGCTCAGATGAAGCAAGCGTTAGAGTGGATACAACTAATGATGATTTTTATCAGAATTTGCAGAACCAAAATCAGCGTTGA 3426 43.32 MRGFGTWKLDDRSKFFNKSLPLDLSTIGGRKPIPKIMIQLQMPSMAISPHWCWMVNGEICIGLFALRDIKKVYLLSCILSSSFLFQGEEVTFDYNYVRVFGAAAKKCYCGSSQCRGYIGGDPLNSEVIIQSDSDEEFPEPVMLRADGRSWNNNLPTAVSSLDGAKMQPSESIRGFREKRDQTINVAVKSKISVEKEDPLKLSASKISEEKGDLLNLSASKISEEKEDPLNLSASRISEEKEDPLNLSTSTISPLHSSLEFEDSKVASPTPLPENTQQIEDVTSNVFVDQTEISLVDNTADKNTCSIEQEAKLLFHDIDARKKSKLDAVEDKQVYIKSYPRMKTPRKPGSIKKGKVSSVEKVQITNKPQISSIKPKRLIEGSPGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASGASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNIMKQYRSDFKKIPILRKLLKCLMGLVDLLEKDILSNALKGLYLGITRLKLTIYRSSDALIFGAYEDKEYEYLLYPLSEAGEDLDHIIPSQMLLFRGLCRLTSKAIWNDFTEKTREDSKGRMFDFGVPARPKAFPVALSFDACMEELIPWIGLRLEGPLWLGRAVVFFLGAQSRTLIICSGVVSLQGLRKGAFSRSSVLALPVLKVLEYLVTREILTSEHINGGPPCPGMERFITYLGGLRESLLSLTEHDDKQVHQIARSFRDRWFPRHMRKFGYSEREDGRLEVYRGSNCSRFTASHSYRHDQDFRPTDAIDCVKQSMPTSLPDAHPAEICSVASTVEHSLNGQKIRKRKSRWDQPADTSLDLRSKEQKFESTSMQQFDSSQLDSVGVAPMLIDKVNNDDKDSSLSDSIGACCRQDEDIRADSAVQNTLEDTPPGFSSPFNLPLASSSAFSTVLDPPRQSIGNLSCAFSTVGHPQERFISRLPVSYGIPFSIVQQCGTSRAENLECWDVAPGVPFHPFPPLPPYPRGQRGPPTSACCTTVKQSAQEGQVNSHDSRTSFSEESTPSTSTNYQQDLCILSNNQQMLKRAKESSYDLGRRYFRQQKWRNTKFGPPWLQRRNQWGHQGNFRGGASSIGDDNIPNEEISPYCSDEASVRVDTTNDDFYQNLQNQNQR 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35254330 35271206 + Maker00008347 Lcy10g1258 644769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1258 1141 PANTHER SET DOMAIN PROTEINS 53 1008 IPR050777 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0046975(PANTHER)
Lcy10g1258 1141 SUPERFAMILY SET domain 52 116 IPR046341 -
Lcy10g1258 1141 SMART PostSET_3 103 119 IPR003616 -
Lcy10g1258 1141 MobiDBLite consensus disorder prediction 224 242 - -
Lcy10g1258 1141 MobiDBLite consensus disorder prediction 1001 1038 - -
Lcy10g1258 1141 Gene3D SET domain 38 135 IPR046341 -
Lcy10g1258 1141 ProSiteProfiles Post-SET domain profile. 103 119 IPR003616 -
Lcy10g1258 1141 MobiDBLite consensus disorder prediction 224 248 - -
Lcy10g1258 1141 MobiDBLite consensus disorder prediction 994 1038 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1258 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1258 Lcy-Chr10:35254330 Lcy9g1216 Lcy-Chr9:36578577 4.73E-06 dispersed
Lcy10g1258 Lcy-Chr10:35254330 Lcy2g1383 Lcy-Chr2:16301732 6.43E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48