Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1259 ATGAAATTGCTCCAAAATGGGGTCGCCGGCGACCCACTGCAAGTTGATTCCGGCCGTTCTGTGCTGGTGGGCATGAAATTGGACTCCCATAGTAGAGAGCTGCTAACTTGGGCTTTGGTTAAGGTCGCTCAGCCTGGTGACCTTGTGATCGCTCTCCATGTTCTTGGCAACGATGAAATTGTGAATCAAGATGGGAAATCTTCGCTTCTTTCTCTTGTAAAAGCGTTCGACTCTGTGCTTGCTGTTTATGAAGGTTTCTGCAACTTGAAGCAGGTGGATCTGAAGCTCAAAATCTGCAGAGGAGCATCGGCTAGAAAAATATTAGTTCGTGAAGCAAAATCGTATTGCGCTGCTAACGTGATTGTTGGGACGGCTCGTAAGCACCACAAAATCCGTTCATCGACTTCCGTTGCTAAGTACTGCGCCAAAAAATTGCCCAAAGATTGTTGGGTACTCGCTGTTCATAATGGGAAAGTGATTTTCGAACGAGCGGGCTGTCCATCGGCAACAGGGGACTGCCAAGGAATTGAGGAACAACGTCGAAGCAATTTGCTCAGTGCAGTTTACGGATCCTCGGGTAGCCCTCCCAAAGTTCAAAGTGGTGAGAGTTTTGCTTCTCTGTTGGCGAGGGACAGAGGTGATCTGGGAATTGGTAAGAATTCCGATCAGGGAGTAGCAAAAGCCATTTTGGATAGTACTGATAAACAGAACTGCTCAATTTGTGGATCGGAGTCGAGTTCTGTGGTACAATCTGCTGAGATATCTTCTGGTGATGGAGATAAACAAGATGAATCTTTGGCTATTGTTCCTGTACAAAAAGTCGAGGTAGCTTCGAGTTCGATTACTAAGTTGATCAAGCAATTGCCTGAAGTGAAGCCAGGTTGGCCTCTGCTTCGACATGTTGATCAATCGGGTCAACAAGCTTCGTCCAACAGATCATTGGCCAAGCAAATCTCTGTAGTTCAGTGGGCAATGAGGTTACCTAGCCGGTCTCCTTCTTTACCTGCTGCTTTGGATTACAAATCTAGTACCTCTGGTGAATCTTTGGGCCTTGATGGGGAAAATGGGGCTTTGGTTCTGGTGGGTTCTGACCCAGTGACTTCTCCGCTCTCCCCCGAGCCCAGCTCCGAAACCTTACCGAAGGAATTGGAAGGTTTTCACGAGAAATACTCATCAACTTGTAGATTGTTTAATTATCATGAACTCCTAACAGCAACGTCAAATTTCTTACCCGAAAATTTGATTGGGAAAGGAGGAAGCAGCCAGGTTTTTAGAGGTTGCCTTCCTGATGGCAAGGAGGTTGCTGTGAAGATCTTGAAGCCATCAGAAGATGTTGTGAAAGAATTTTCTATGGAAATTGAGATCATTACCTCCTTAAGCCACAAGAATATCATTTCCCTTTTGGGATTTTGCTTTGAAAATAGCAAGTTCCTGTTGGTTTATGATTTCCTGTCAAGGGGAAGTCTTGAAGAAATCCTTCATGGGAATAGAAAGAATCCAAATGCATTTGGTTGGAGTGAAAGATATAAGGTTGCTATCGGTGTAGCTGAGGCGTTGGATTATCTCCATAGTGATGCTCAGCGTGTGATCCATAGGGATGTTAAATCGTCAAACGTCTTGTTATCTGATGATTTCGAACCACAGTTATCAGATTTTGGGCTGGCTAAACAGGCATCAAACTCGTCGCACGTAACGTGTACAGACGTTGCAGGAACCTTCGGTTACCTGGCTCCTGAGTATTTCATGTACGGCAAGGTAAATGACAAGATTGATGTCTATGCTTATGGCGTGGTACTCCTCGAACTTCTTTCTGGGAGAAAACCGATAAGCACCGAGTGTCCGAAAGGGCAAGAAAGCCTAGTCATGTGGGCAAGGCCGATTTTAATTGACGGGAAGGTGTCTCGGTTACTCGATCCTAACTTGGGAAGTAACTACAACCAGGACGAGATGGAGCGTGTGGTTCTTGCGGCCAGCCTTTGTATCAGACGCGCCCCACGAGCTAGGCCTCCAATGAGCCTTGTTCTAAAACTTCTCCAAGGTGATGCAGATGTAACCAAGTGGGCAAGGCAACAGATCAATGCTCTAGAGGATTGCAACACTCTAGACGATGAAGTATGTCCTCGATCCGATATCCAATCACATCTCAACCTTGCATTGCTCGACGTCGATGACGACTCACTCTCCCTAAGCAGCATTGAACAGACTATCTCACTGGAGGACTATCTGCAAGGCAGGTGGAGTCGTTCATCGAGCTTCGACTAA 2262 46.15 MKLLQNGVAGDPLQVDSGRSVLVGMKLDSHSRELLTWALVKVAQPGDLVIALHVLGNDEIVNQDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGASARKILVREAKSYCAANVIVGTARKHHKIRSSTSVAKYCAKKLPKDCWVLAVHNGKVIFERAGCPSATGDCQGIEEQRRSNLLSAVYGSSGSPPKVQSGESFASLLARDRGDLGIGKNSDQGVAKAILDSTDKQNCSICGSESSSVVQSAEISSGDGDKQDESLAIVPVQKVEVASSSITKLIKQLPEVKPGWPLLRHVDQSGQQASSNRSLAKQISVVQWAMRLPSRSPSLPAALDYKSSTSGESLGLDGENGALVLVGSDPVTSPLSPEPSSETLPKELEGFHEKYSSTCRLFNYHELLTATSNFLPENLIGKGGSSQVFRGCLPDGKEVAVKILKPSEDVVKEFSMEIEIITSLSHKNIISLLGFCFENSKFLLVYDFLSRGSLEEILHGNRKNPNAFGWSERYKVAIGVAEALDYLHSDAQRVIHRDVKSSNVLLSDDFEPQLSDFGLAKQASNSSHVTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAYGVVLLELLSGRKPISTECPKGQESLVMWARPILIDGKVSRLLDPNLGSNYNQDEMERVVLAASLCIRRAPRARPPMSLVLKLLQGDADVTKWARQQINALEDCNTLDDEVCPRSDIQSHLNLALLDVDDDSLSLSSIEQTISLEDYLQGRWSRSSSFD 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35286296 35290197 + Maker00008449 Lcy10g1259 644770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1259 753 CDD USP_Like 21 151 - -
Lcy10g1259 753 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 155 - -
Lcy10g1259 753 Gene3D Phosphorylase Kinase; domain 1 377 483 - -
Lcy10g1259 753 ProSitePatterns Protein kinases ATP-binding region signature. 415 437 IPR017441 GO:0005524(InterPro)
Lcy10g1259 753 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 18 155 - -
Lcy10g1259 753 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 378 483 - -
Lcy10g1259 753 PANTHER OS08G0249100 PROTEIN 74 721 IPR046958 -
Lcy10g1259 753 SMART serkin_6 409 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1259 753 FunFam Putative receptor-like serine/threonine-protein kinase 484 694 - -
Lcy10g1259 753 CDD STKc_IRAK 415 680 - -
Lcy10g1259 753 Gene3D Transferase(Phosphotransferase) domain 1 484 696 - -
Lcy10g1259 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1259 753 Pfam Protein kinase domain 413 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1259 753 Pfam Universal stress protein family 19 151 IPR006016 -
Lcy10g1259 753 Gene3D HUPs 18 157 IPR014729 -
Lcy10g1259 753 SUPERFAMILY Protein kinase-like (PK-like) 390 685 IPR011009 -
Lcy10g1259 753 ProSiteProfiles Protein kinase domain profile. 409 688 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1259 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1259 Lcy-Chr10:35286296 Lcy8g1256 Lcy-Chr8:39141190 2.18E-158 dispersed
Lcy10g1259 Lcy-Chr10:35286296 Lcy8g0109 Lcy-Chr8:2555692 5.80E-262 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65380 None None None None Lcy PK