Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1261 ATGGGGGTCTCAACTTTTACGGCCTTCATGTCTCTTTTCCTCGAGTTGTTGTGGAGGTCTATGGTTATCAATGTGGAATATAATCAGCTTGATCCACTGCTTAGAGCAACTGGATGTCCTGATGGTGATGTCAATAATGAGACCGGCTTCTCTCCATTTCCAGGAAATATAAACCAATTAATTTTAGAACTTGGTCCCTACATTGACGAGCTGAGCAAAACAGGAGGTGCTATAAAGGAGTTTGTCAATCCCAAATATAAAGATGCTAGCAAGACTTCTTTCAAGTCTTCAACCCGATTGGAATGTATGATGCAAGATTATCCGAAAACATTACCTCCATCAGCTAGGGTTGGATTCACGGTGATGGATACCTGGCTTGCTTATGCACCAGTGAAGAATAACCCTGAAGATGCTGCTAAGGTACCAAAGGGAAACCCATATCACAGTGCCACTTCTGGGGAAATGGCCATATATCGTGCAAATAGTCTTATTCTCAGAAAGGCAGGAGTTCAAGTAGCCGATCCAGTCAAACAGGTATTCAATGGCCAAGAGGTTGAAGTCTGGCCTCGCATCACATGGAAACCGAAATGGGGTTTGACCTTTTCAGAGATAAAGAGCAGAATTAGTGGAAATTGCTCCATTTCTCAGCGTTCTACCATGGTCATCAAGGGTCGCAATGTTTATCTTAAAGACCTCTCCCTGGATGGAACTCTTATTGTGAATGCAGTTGAAGATGCTGAGGTAAAAGTGGGTGGTTTAGTGCAAAACAAGGGTTGGACTCTCGAACCCGTTGATCATAAAGATACTTCGGTGCCAGAGGAAATAAGGACAAGGGGCTTCAGAATCAACAAAATCGAGCAGGAAGAAAGAAATTAA 876 43.04 MGVSTFTAFMSLFLELLWRSMVINVEYNQLDPLLRATGCPDGDVNNETGFSPFPGNINQLILELGPYIDELSKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSARVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYRANSLILRKAGVQVADPVKQVFNGQEVEVWPRITWKPKWGLTFSEIKSRISGNCSISQRSTMVIKGRNVYLKDLSLDGTLIVNAVEDAEVKVGGLVQNKGWTLEPVDHKDTSVPEEIRTRGFRINKIEQEERN 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35307086 35311864 + Maker00008741 Lcy10g1261 644772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1261 291 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 169 IPR029044 -
Lcy10g1261 291 SUPERFAMILY Nucleotide-diphospho-sugar transferases 20 242 IPR029044 -
Lcy10g1261 291 FunFam UDP-sugar pyrophosphorylase 170 290 - -
Lcy10g1261 291 Gene3D - 170 290 - -
Lcy10g1261 291 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 20 270 IPR039741 GO:0003977(PANTHER)|GO:0006048(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1261 K12447 - - csv:101202798 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1261 Lcy-Chr10:35307086 Lcy13g1039 Lcy-Chr13:22711472 2.59E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g205 Blo01g01310 Blo12g01117 Bda01g00679 Bda03g00024 Bpe02g00626 . Bma04g00020 Bma01g02093 Cmo04g02509 . . . . . Sed01g3096 . . Bhi04g01859 Tan11g1232 Cmetu03g0430 . Hepe02g2207 . Lcy10g1261 Cla08g00628 Cam08g1046 Cec08g0632 Cco08g0744 Clacu08g0753 . Cre08g0562 . . Cone17ag0816 Cone20ag0421 . . . Cme03g00485 . . . . . . . . . . . . . Car04g02317 . Cpe01g02078 . . . . . . . . . . . . . . . Lsi08g00468 . Chy03g00748 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009046 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34