Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1274 ATGGTGCTTGATTGGGGCATCAAAAATGAGACTTGTTTAACTGCTGAAAACAAAACGAATTGTATATGTGGACCAAACAGCAAAAGGAACAGTAGCAGCTTCTCTGATGATGGATCTGAATATCGTTGCCAGTGCTTAGATGGTTTTGAGGGGAATCCATATCTCCCTGATCAAGGTTGTCAAGATATAGATGAATGCGAGAATAGAAGCCATGGATGTGCATCCAAAGACTATTGTGTTAACATACCAGGAAACTACACTTGTATTTGTCCTAAAAACCATGAAGGAGATGGCAGACGTGAGGGAAAAGGTTGCACACCAATCTCCAAGTCTTCCATTCAAATCGTCATTATTGGAGTTGGTGTGGGTTTCATCGTTTTGCTCATCGGCAGTACATGGATTTACTTAGTTTACAAAAGGTGGAAGTTCATCCAACAAAAAGACAAGTTTTTCAAGAACAACGGAGGCGTTATGCTTCAACAACACCTTTCTCACTTGCAATCACCCACCGACGTGGTCAGAATTTTCACCCAAGAGGAGTTGGACAAGGCTACTAACAAGTTCGATGAAAGCGCAGTCGTCGGAAAAGGTGGCTTCGGTACCGTCTACAAAGGAGTCTTCGACGATGGTTTGGTCGTTGCAATTAAGAAATCAAAATTGGTTGACCAATCCCAAACTTCCCAATTTATTAACGAAGTCATTGTTCTGTCCCAAATCAACCATCGCAATGTGGTGAGGCTGCTGGGGTGCTGTTTGGAAACACAAGTCCCATTGCTGGTCTACGAGTTCATCACCAACGCCACACTCTTCGACCACATCCATGACAAAACCAAACATGCTTCTCTTTCATGGGAAGCTCGTTTGAAAATAGCTTCCGAAACTGCTGGCGTTCTTTCCTATTTGCATTCTTCTGCTTCCACTCCCATTATCCACAGAGATATCAAGTCCACTAATATACTCTTAGACCATAATTACAAGGCAAAGGTTTCGGATTTCGGTGCTTCGAAGTTGGTCCCAGTGGATCAAACACAACTGTCCACAATGGTGCAGGGGACTCTCGGATATTTGGACCCTGAATACTTGTTGACAAGCGAGCTCACCGAGAAAAGTGATGTATACAGCTTTGGAATTGTGCTTCTGGAGCTTATAACTGGAAAGAAGGCAGTGCGTTTCGATGGACCAGAAGCAGAGAGAAATCTAGCCATGTACGTCCTGTGTGCGATGAAAGAAGATCGTGTTAAAGATGTGGTTGAGGAGGGAATAGCGTGGGAAGGAAATATTGAGCAGATAAAAGAAGTGGCAAGGCTCGCAAAAGAGTGTTTGAGAGTAAGAGGGGAGGAGCGACCCACCATGAAGGAGGTAGCAATGGAGTTGGAAGGACTGAGACGGATGCAGGTTGAGCATTCATGGGCGAATAAGAATGCATCCAACGTAGAAGAGATGACATATTTGCTAGGCGATGGAGCTTCAGACTCGAGCCAATTTGTCGCCAGTGGCAGTATGAATGCTATGGACCATAGTATAAAGGTTCAGATTTTGTCACATATTCATATTCACGATGGAAGATGA 1569 43.98 MVLDWGIKNETCLTAENKTNCICGPNSKRNSSSFSDDGSEYRCQCLDGFEGNPYLPDQGCQDIDECENRSHGCASKDYCVNIPGNYTCICPKNHEGDGRREGKGCTPISKSSIQIVIIGVGVGFIVLLIGSTWIYLVYKRWKFIQQKDKFFKNNGGVMLQQHLSHLQSPTDVVRIFTQEELDKATNKFDESAVVGKGGFGTVYKGVFDDGLVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFITNATLFDHIHDKTKHASLSWEARLKIASETAGVLSYLHSSASTPIIHRDIKSTNILLDHNYKAKVSDFGASKLVPVDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRFDGPEAERNLAMYVLCAMKEDRVKDVVEEGIAWEGNIEQIKEVARLAKECLRVRGEERPTMKEVAMELEGLRRMQVEHSWANKNASNVEEMTYLLGDGASDSSQFVASGSMNAMDHSIKVQILSHIHIHDGR 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35520375 35522190 - Maker00008876 Lcy10g1274 644785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1274 522 CDD EGF_CA 62 97 - -
Lcy10g1274 522 Pfam Calcium-binding EGF domain 62 98 IPR049883 -
Lcy10g1274 522 SMART serkin_6 188 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1274 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1274 522 Gene3D Phosphorylase Kinase; domain 1 160 263 - -
Lcy10g1274 522 FunFam Wall-associated receptor kinase 2 158 263 - -
Lcy10g1274 522 FunFam Fibrillin 2 57 101 - -
Lcy10g1274 522 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 471 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1274 522 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 79 90 IPR000152 -
Lcy10g1274 522 FunFam Wall-associated receptor kinase 2 264 482 - -
Lcy10g1274 522 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524(InterPro)
Lcy10g1274 522 ProSiteProfiles EGF-like domain profile. 62 97 IPR000742 -
Lcy10g1274 522 SUPERFAMILY EGF/Laminin 60 109 - -
Lcy10g1274 522 CDD STKc_IRAK 194 461 - -
Lcy10g1274 522 SUPERFAMILY Protein kinase-like (PK-like) 166 458 IPR011009 -
Lcy10g1274 522 ProSiteProfiles Protein kinase domain profile. 188 471 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1274 522 Gene3D Transferase(Phosphotransferase) domain 1 264 483 - -
Lcy10g1274 522 SMART egfca_6 62 106 IPR001881 GO:0005509(InterPro)
Lcy10g1274 522 Gene3D Laminin 27 102 - -
Lcy10g1274 522 ProSitePatterns Calcium-binding EGF-like domain signature. 62 88 IPR018097 GO:0005509(InterPro)
Lcy10g1274 522 Pfam Protein kinase domain 190 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1274 Lcy-Chr10:35520375 Lcy10g1278 Lcy-Chr10:35570950 1.15E-289 dispersed
Lcy10g1274 Lcy-Chr10:35520375 Lcy10g1276 Lcy-Chr10:35555814 2.24E-294 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65381 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1274 - - - 0.0