Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1276 ATGGTGGTGAAGATAGCCATATTAGCACTGGCAGCAGCGGTAGCTTCTCAAGCCAAACCCGGGTGCGAGGATAAGTGCGACAACTTGGAAATTCCATACCCATTCGGGATGAGCAAAGAGTGCTATCTCGATGAAAATTTCTTCATCGAGTGTAACAAAACTTATGATCCGCCAAAGCCATTTCTAATGGGCAGCAACATTGAAGTAACCAATATATCCCTCTACGGCGAGCTCCAAATCCTGCAGTACGTAGCCCGAGATTGCTACTCAAAAGATGGTCCCAGTGTCAACAATAGACCCTATCTAAGGGTGCCCATGTTCACCATTTCCAACACCAAGAACAAGTTTACCGTCATCGGGTGCGATACCTACGCTTATCTTTATGGCGAACTCGACGGGGAATCCTACACAAGTGGTTGCATTGGGTGGTGTGGAAACAATACTAAGTTGACAAGAGATGGGTCCTGCTCTGGCAATGGATGCTGTCAGCTAGAGATTCCCAAAGGCCTAAAGTATTTGGACTACGAGGTGAAAAGCTTCAACAATCACACTGGGGTGCTCAACTTCAATCCTTGTGGGTATGCTTTTGTAATCGAACAAGACAACTTCACTTTCTCCTCCTCATATTTTCGCGAATTTCCCCAAGACAGGGTTCCACTAGTGCTCGATTGGGGCATAAAAAATGATACTTGCTTAACAGCTAACAACACAGACAATTGTCTATGTGGACCAAACAGCAAAAGGAATAGTAGCTTATCCGTTGATGGATCTGAATATTACTGTCAGTGCTTGGATGGTTTCCAGGGGAATCCATATCTTGGTTGTCAAAATATAAATGAATGCGAGGGAAAGTTCCATAATTGTCTTAGCAAAGACCACTGTAAAGACACAAATGGAAGCTATACTTGCTATTGTCCTGACGGCTTTGGAGATGGAACTCTTAACGGAACCCGTTGCACCTCAAAGTCTCTGTCTCCGGTCCGTATCATCGTTGGAGTCGGTGTGGGTTTCACAGTTTTGCTGATTGGAAGTACATGGATGCACTTGGTTTACAAAAAGTGGAAGTTCATCCAACGAAAAGACAGGTTCTTCAAGAATAATGGAGGTTTTCTGCTTCAGCAACATCTTTCTCAGGGGCAGTCATCCACCGACTCCGTCAGAATTTTCACTCAAGAAGAGTTGGAAAAGGCTACAAACAAATTCGATGAAAGCGCAGTGGTTGGAAAAGGTGGCTATGGCACCGTTTACAAAGGACTCTTAGCCGATGGTTCGGTAGTCGCAATTAAAAAATCAAAACTAGTGGACCAATCCCAAACTTCCCAATTCATTAACGAAGTCATTGTTTTGTCCAAAATCAACCACCGCAACGTGGTGAAGCTACTAGGGTGTTGTTTGGAGACGGAAGTCCCGTTGCTGGTCTATGAGTTCATCACCAACGGCACACTTTTTGACCACATTCATGACAAAACCAAACATGCTTCTCTTTCTTGGGAAGCTCGTTTGAAGATAGCTTCTGAAACTGCAGGCGTCCTTTCGTATTTGCATTCATCAGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCACTAATATACTTTTAGACCACAATTATACTGCAAAAGTCTCTGATTTCGGTGCTTCAAAGTTGGTACCATTGGATCAAACTCAACTATCCACAATGGTACAAGGGACTCTCGGATATTTGGACCCCGAATACTTGTTGACAAGCGAGTTGACGGAGAAAAGTGATGTATACAGCTTTGGAATTGTGCTTCTGGAGCTTATAACTGGAAAGATGGCGGTGCGTTTCGATGGGCCAGAAGCAGAGAGAAATCTAGCCATGTATGCGCTGTGTGCAATGAAAGAAGATCGTGTTGAAGACGTTGTAGAGAAGAGAATGGCGACGGAAGAGAACTTTAAGCAAATTAAAGAAGTGGCAAAGCTGGCAAAAGAGTGTTTGAAAGTAAAAGGAGAGGAGCGACCCACCATGAAGGAGGTGGCAATGGAGTTAGAGGGTCTTAGACAGATGCAGATTGAGCATTCCTGGGCCAATAAGAATTTATCCAACGTAGAAGAGATGACATATTTGCTAGATGGAGCTTCAAACTCAAACTCATTTGTTGTCGGTGACAGTATGAATACTATGGACTATAGCATAAAGGCTCAAATTTTGTCACGTATGCCCGATGGAAGATGA 2199 43.7 MVVKIAILALAAAVASQAKPGCEDKCDNLEIPYPFGMSKECYLDENFFIECNKTYDPPKPFLMGSNIEVTNISLYGELQILQYVARDCYSKDGPSVNNRPYLRVPMFTISNTKNKFTVIGCDTYAYLYGELDGESYTSGCIGWCGNNTKLTRDGSCSGNGCCQLEIPKGLKYLDYEVKSFNNHTGVLNFNPCGYAFVIEQDNFTFSSSYFREFPQDRVPLVLDWGIKNDTCLTANNTDNCLCGPNSKRNSSLSVDGSEYYCQCLDGFQGNPYLGCQNINECEGKFHNCLSKDHCKDTNGSYTCYCPDGFGDGTLNGTRCTSKSLSPVRIIVGVGVGFTVLLIGSTWMHLVYKKWKFIQRKDRFFKNNGGFLLQQHLSQGQSSTDSVRIFTQEELEKATNKFDESAVVGKGGYGTVYKGLLADGSVVAIKKSKLVDQSQTSQFINEVIVLSKINHRNVVKLLGCCLETEVPLLVYEFITNGTLFDHIHDKTKHASLSWEARLKIASETAGVLSYLHSSASTPIIHRDIKSTNILLDHNYTAKVSDFGASKLVPLDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKMAVRFDGPEAERNLAMYALCAMKEDRVEDVVEKRMATEENFKQIKEVAKLAKECLKVKGEERPTMKEVAMELEGLRQMQIEHSWANKNLSNVEEMTYLLDGASNSNSFVVGDSMNTMDYSIKAQILSRMPDGR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35555814 35558364 - Maker00008459 Lcy10g1276 644787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1276 732 FunFam Wall-associated receptor kinase 2 371 476 - -
Lcy10g1276 732 Pfam Protein kinase domain 403 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1276 732 SUPERFAMILY Protein kinase-like (PK-like) 381 671 IPR011009 -
Lcy10g1276 732 CDD EGF_CA 277 309 - -
Lcy10g1276 732 Gene3D Phosphorylase Kinase; domain 1 372 476 - -
Lcy10g1276 732 SMART egfca_6 277 320 IPR001881 GO:0005509(InterPro)
Lcy10g1276 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1276 732 Gene3D Plasmodium vivax P25 domain 222 325 - -
Lcy10g1276 732 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 681 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1276 732 ProSitePatterns Calcium-binding EGF-like domain signature. 277 303 IPR018097 GO:0005509(InterPro)
Lcy10g1276 732 Pfam Wall-associated receptor kinase galacturonan-binding 22 75 IPR025287 GO:0030247(InterPro)
Lcy10g1276 732 SMART serkin_6 401 674 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1276 732 ProSiteProfiles Protein kinase domain profile. 401 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1276 732 Gene3D Transferase(Phosphotransferase) domain 1 477 696 - -
Lcy10g1276 732 FunFam Wall-associated receptor kinase 2 477 695 - -
Lcy10g1276 732 CDD STKc_IRAK 407 674 - -
Lcy10g1276 732 ProSitePatterns Protein kinases ATP-binding region signature. 407 430 IPR017441 GO:0005524(InterPro)
Lcy10g1276 732 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 294 305 IPR000152 -
Lcy10g1276 732 ProSiteProfiles EGF-like domain profile. 277 320 IPR000742 -
Lcy10g1276 732 SMART egf_5 230 276 IPR000742 -
Lcy10g1276 732 SMART egf_5 280 320 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1276 Lcy-Chr10:35555814 Lcy10g1287 Lcy-Chr10:35722679 0 dispersed
Lcy10g1274 Lcy-Chr10:35520375 Lcy10g1276 Lcy-Chr10:35555814 2.24E-294 proximal
Lcy10g1276 Lcy-Chr10:35555814 Lcy10g1278 Lcy-Chr10:35570950 0 proximal
Lcy10g1275 Lcy-Chr10:35527108 Lcy10g1276 Lcy-Chr10:35555814 2.51E-92 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65382 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1276 - - - 0.0