Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1278 ATGGGGCGTACAACGGAGACGCTTGTGCGACTCATGGTTGTGAACATAGCCATTTTGTCAGTGGCCGTGGCAGCGTCCGTTGCTTCTCATTCTCTAACCAAACCCGGTTGCAATGATAAGTGTGGAGACTTGACGATTCCTTATCCATTCGGGATGAGCCCAGAATGTTATCTCAATATAAATTTCTCCATTACCTGCAACACAACTCATTATCATCCTCCGCAGGCATTTCTGATGGAGAGCAACATTTATGTTACCAATATATCCATCCTCGACGGCGAGATTCACATCTTGCAGTACGTAGCCCAAGATTGCTATTCACAAGAGGGTCGCGTGTACTCCAACAAACCCACTCTCACCGTGCCCATGTTCAACATTTCCAACACGAAGAACAAGTTCACCGTCATCGGCTGCGATACTTACGCCTATATTTACGGCCAACTCGAGGGGGAAAACTACACAAGTGGGTGCATTGGGTGGTGTACAGACAATACTAAAACAATAAGAGAAGGGTCCTGCTCTGGCAATGGGTGCTGTCAGTTGGAGATTCCCAAAGGCCTAAAAAATTTGGAGTTGGAGGTGGGAAGCTTCAAAAATCACACTAAGGTACTCGACTTCAATCCCTGTGGATATGCCTTTGTAATCCAACAAGACAACTTCACTTTCTCCTACAAATATTTGAGTGAATTTAAGGAAGAGAAAGTTCCACTGGTGCTTGATTGGAGCATCAAAAATGATACTTGCTCAACAGATAACATCACAGACAATTGCCTATGTGGACTAAACAGCAAAAGGAATAATAGCTTCTCCGTTGATGGATCTGAATATCATTGCCACTGCTTCGAAGGTTTCCAGGGGAATCCATATCTCCCTCAAGGTTGTCAAGATATTGATGAATGCGAAATTGGAACTCATGAATGTGAAACCAAAGAGCAGTGTATTAACACGCCAGGAAACTATACCTGCTATTGTCCTGAGAACTATCAAGGAGATGGAAGGCGTGACGGAAAAGGTTGCACCAAAATCTCCAAGTCTTGGATTCAAATCATCATCGGAATTGGGGTGGGGTTCGTAGTTTTATTGATTGGCAGCACATGGTTATACTTTGGTTACAAAAAATGGAAGTTCATCCAACAGAAAGACAAGTTTTTCAAGAAAAATGGAGGCCTCATGCTTCGACAACACCTTTCTCAGTGGCAATCATCCGTTGACACGGTCAGAATTTTCACCCAAGAAGAGTTGGAGAAAGCTACAAACAAGTTCGACGAAAGAACGGTGGTAGGAACAGGTGGCTACGGCACTGTTTACAAAGGAGTCTTAGATGGTGGTTTGGTTGTCGCAATTAAGAAATCAAAATTAGTGGACCAATCTCAAATCTCCCAATTCATCAACGAAGTCATTGTTTTATCCCAAATCAACCATCGACACGTGGTGAAGCTGTTAGGGTGTTGTTTGGAGACGCAAGTTCCATTGTTGGTGTACGAGTTCATCACCAACGGCACACTCTTCGACCACATCCATGACAGAACCAAGTATGCTTACCTTTCATGGGAAGCTCGCTTGAAAATAGCTTCTGAAACTGCAGGCGTTGTTTCATATTTGCATTCTTCCGCTTCCATTCCAATTATCCACAGAGATATCAAGTCCACTAACATACTCTTAGACGATAATTATACTGCAAAGGTCTCTGATTTCGGTGCTTCGAAGTTGGTTCCGATGGATCAAACTCAACTTTCTACGATGGTGCAAGGAACTCTTGGATATTTGGATCCCGAATACTTGTTAACGAGTGAGTTGACGGAGAAGAGTGATGTGTACAGCTTTGGAATTGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCGGTGTGTTTTGATGGGCCAGAAGCAGAGAGGAATCTGGCCATGTACGTGCTTTGTGCAATGAAAGAAGATCGTTTAGGAGAAGTTGTGGAGAAGGAAATGGCGACAGAAGGTAACTTTGATCAGATAAAAGAAGTTGCAAAACTAGCAAAAGACTGTGTGAGAGTGAAAGGAGAGGAGCGACCCAGCATGAAGGATGTAGCAATGGAGTTGGAGGGACTGAGAGTGATGCAGGTCCAACATTCAGGGGCTAAGAACGATTCATCCAATGCAGAAGAGTTGGTAAATTTGTTGGATGAAGCATCAGACTCGAGCCAGTTTATTGTCAGCGGCAGTATCAATGCTATGGACAATAGCATAAAGGCTCAGGTTTTGACACATATCCCTGATGCAAGATGA 2259 43.69 MGRTTETLVRLMVVNIAILSVAVAASVASHSLTKPGCNDKCGDLTIPYPFGMSPECYLNINFSITCNTTHYHPPQAFLMESNIYVTNISILDGEIHILQYVAQDCYSQEGRVYSNKPTLTVPMFNISNTKNKFTVIGCDTYAYIYGQLEGENYTSGCIGWCTDNTKTIREGSCSGNGCCQLEIPKGLKNLELEVGSFKNHTKVLDFNPCGYAFVIQQDNFTFSYKYLSEFKEEKVPLVLDWSIKNDTCSTDNITDNCLCGLNSKRNNSFSVDGSEYHCHCFEGFQGNPYLPQGCQDIDECEIGTHECETKEQCINTPGNYTCYCPENYQGDGRRDGKGCTKISKSWIQIIIGIGVGFVVLLIGSTWLYFGYKKWKFIQQKDKFFKKNGGLMLRQHLSQWQSSVDTVRIFTQEELEKATNKFDERTVVGTGGYGTVYKGVLDGGLVVAIKKSKLVDQSQISQFINEVIVLSQINHRHVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKYAYLSWEARLKIASETAGVVSYLHSSASIPIIHRDIKSTNILLDDNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCFDGPEAERNLAMYVLCAMKEDRLGEVVEKEMATEGNFDQIKEVAKLAKDCVRVKGEERPSMKDVAMELEGLRVMQVQHSGAKNDSSNAEELVNLLDEASDSSQFIVSGSINAMDNSIKAQVLTHIPDAR 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35570950 35573598 - Maker00008693 Lcy10g1278 644789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1278 752 CDD STKc_IRAK 427 694 - -
Lcy10g1278 752 ProSiteProfiles EGF-like domain profile. 296 331 IPR000742 -
Lcy10g1278 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1278 752 SUPERFAMILY Protein kinase-like (PK-like) 398 692 IPR011009 -
Lcy10g1278 752 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 313 324 IPR000152 -
Lcy10g1278 752 CDD EGF_CA 296 331 - -
Lcy10g1278 752 SMART serkin_6 421 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1278 752 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524(InterPro)
Lcy10g1278 752 Gene3D Laminin 244 339 - -
Lcy10g1278 752 Pfam Calcium-binding EGF domain 296 334 IPR049883 -
Lcy10g1278 752 FunFam Wall-associated receptor kinase 2 497 714 - -
Lcy10g1278 752 Pfam Wall-associated receptor kinase galacturonan-binding 37 97 IPR025287 GO:0030247(InterPro)
Lcy10g1278 752 Pfam Protein kinase domain 424 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1278 752 ProSitePatterns Calcium-binding EGF-like domain signature. 296 322 IPR018097 GO:0005509(InterPro)
Lcy10g1278 752 ProSiteProfiles Protein kinase domain profile. 421 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1278 752 Gene3D Phosphorylase Kinase; domain 1 393 496 - -
Lcy10g1278 752 SUPERFAMILY EGF/Laminin 294 344 - -
Lcy10g1278 752 FunFam Wall-associated receptor kinase 2 391 496 - -
Lcy10g1278 752 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 706 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1278 752 Gene3D Transferase(Phosphotransferase) domain 1 497 717 - -
Lcy10g1278 752 FunFam Fibrillin 2 291 335 - -
Lcy10g1278 752 SMART egfca_6 296 340 IPR001881 GO:0005509(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1274 Lcy-Chr10:35520375 Lcy10g1278 Lcy-Chr10:35570950 1.15E-289 dispersed
Lcy10g1275 Lcy-Chr10:35527108 Lcy10g1278 Lcy-Chr10:35570950 6.41E-94 dispersed
Lcy10g1278 Lcy-Chr10:35570950 Lcy10g1287 Lcy-Chr10:35722679 0 dispersed
Lcy10g1276 Lcy-Chr10:35555814 Lcy10g1278 Lcy-Chr10:35570950 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65383 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1278 - - - 0.0