Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1281 ATGAGACGTTCAACAAAGACGACGCTCGTACCTCTCATGGTGATGAAGATAGCCATGTTCTCAACAGCCTTGGCCGTAGTAGCTTCTCAAGCCTTACCCGGCTGCGACGAATGGTGTGGCGACGTGCAAATTCCATATCCATTCGGCACGAGAAAAGGGTGTTATCTCAATGAAACGTTCTCGATTACTTGCAACAAAAACGATAGCAATAAACCTCCAAAGGCGTTTCTAATGAACACCAACATCAGCGTTACCAATATATCCATCGATGGTGAGCTCCACATCTTGCAGCCCATAGTGCGAGAATGTCGCAGGGCAGTAGCTGGTCCTTTTGTTCCCAACACAACCGATCTTTCGGTGCCGGCCATGTTCCCGATTGCTGATGCCAAAAACAAGTTCATTGCCATCGGCTGCGATACAATCGGTGTAGTTGTCGGGATGCTAAACGGGAGTGATTATGGAAGTGGGTGTGTTTCGATGTGTTTCAGCAATAGTACTATAAATGATGGGACGTGCTCTGGCATTGGGTGCTGTCAGTTGGAGATTCCGAATGGGTTGAGGAATTTGAGTTTGGCGGTGAGTGCCGTCTTGAATTACACTCTTGCACCAAATTCCAGTTCCTGTGGGTATGCTTTTGTAACCGGAGATGAGGGGTTCGAGTTTTCGTCAACTTATATTGAGAATTTTGAAGATGAGGAAGTTGAGGTTGTGGTTGGTTGGGCCATTGGAAAAGAAACAAAAGATGTATGTGGACCAAACAGCAAAAGGAATAGTAGCTTCTCTGATGATGGATCTGAATATCGTTGCCAATGTTTGGATGGTTTCGAGGGGAATCCATATCTCCCTCAAGGTTGTCAAGATAAGGATGAATGCAAGGATGAAGGGCGAAATGATTGTATATACAAGAACAAGTGTGTTAACACAATAGGAAACTATACCTGCAATTGTCCTAACAACTTTAAAGGAGATGGAAGACTTGGGGGAGAAGGTTGCGTCCGAGATTCCAAGACAATTCCGATCATCATCGGAATTGGGGTAGGCTTCACAGTTTTACTCATTGGCAGCACATGGATATACTTATGTTACAAAAAGCGGAAGTTCATCAAACAGAAAGAGCAATTTTTCCAGAAAAATGGAGGGTTCATACTTCAACGACAGCTTTCTCAATGGCAATCGCCGAATGAGATGGTCAGAATTTTCACCCAAGAAGAGTTGGAGAAGGCCACCAACAACTACGACCACACCACTATTGTCGGCAAAGGTGGCTATGGCACTGTTTACAAAGGAGTCTTGGACGATGGTCTAACCGTTGCTATCAAGAAATCTAAATTCGTGGACCAATCTCAAACCGCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTTAGGCTCTTGGGGTGTTGTTTGGAGACACAGGTTCCACTGTTGGTCTACGAGTTCATCACCAATGGCACACTCTTTGATCACATCCATGACAAAACCAAAAAGGTTTCCCTTTCTTGGGAAGCTCGCTTGAAAATAGCTTTGGAAACTGCAGGCGTCCTTTCGTATTTGCATTCTTCGGCTTCTACTCCCATCATCCACAGAGATATCAAGACCACTAACATACTTTTAGACGACAACTACACTGCAAAGGTCTCTGATTTCGGTGCTTCGAAGTTGGTTCCTTTGGATCAAACTCAGATATCTACATTGGTGCAAGGGACTCTTGGATATTTAGACCCTGAATACTTACTGACAAGTGAGTTGACGGAGAAAAGCGATGTGTACAGCTTTGGAATTGTGCTTCTAGAGCTTATAACTGGGAAGAAGGCGGTGAGTTTCAATGGGCCAGAAGAAGAGAGAAATTTGGCGGTGTATGTCCTGTGTGCAATGAAAGAAGATCGGTTGGAAGAAGTTGTGGAGATGGGAATGGCGAGAGAGGCAAATTTTGAGCAAATAAAAGAAGTGGCTGAGCTAGCAAAAAAGTGTTTAAGAATCAAAGGGGAGGAGCGACCCAGCATGAAGGAAGTAGCCATGGAGTTGGAGGGACTGCGAGTAATGAAGGTGGAGCATTCATGGACGAATACTAATTTATCCAACACAGAAGAGATGGCATGTTTGCTGGATGGAACTTCAGATTCGAGCCAATTTGTTGTGAGTGGCAGTATGAATATTGTGGGCGATAGCATAAAAGCTCGAATTATGTCACCTATCAACCATGGAAGATGA 2232 44.35 MRRSTKTTLVPLMVMKIAMFSTALAVVASQALPGCDEWCGDVQIPYPFGTRKGCYLNETFSITCNKNDSNKPPKAFLMNTNISVTNISIDGELHILQPIVRECRRAVAGPFVPNTTDLSVPAMFPIADAKNKFIAIGCDTIGVVVGMLNGSDYGSGCVSMCFSNSTINDGTCSGIGCCQLEIPNGLRNLSLAVSAVLNYTLAPNSSSCGYAFVTGDEGFEFSSTYIENFEDEEVEVVVGWAIGKETKDVCGPNSKRNSSFSDDGSEYRCQCLDGFEGNPYLPQGCQDKDECKDEGRNDCIYKNKCVNTIGNYTCNCPNNFKGDGRLGGEGCVRDSKTIPIIIGIGVGFTVLLIGSTWIYLCYKKRKFIKQKEQFFQKNGGFILQRQLSQWQSPNEMVRIFTQEELEKATNNYDHTTIVGKGGYGTVYKGVLDDGLTVAIKKSKFVDQSQTAQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFITNGTLFDHIHDKTKKVSLSWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPLDQTQISTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFNGPEEERNLAVYVLCAMKEDRLEEVVEMGMAREANFEQIKEVAELAKKCLRIKGEERPSMKEVAMELEGLRVMKVEHSWTNTNLSNTEEMACLLDGTSDSSQFVVSGSMNIVGDSIKARIMSPINHGR 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35593004 35596313 - Maker00008657 Lcy10g1281 644792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1281 743 Gene3D Laminin 244 331 - -
Lcy10g1281 743 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Lcy10g1281 743 SUPERFAMILY EGF/Laminin 286 323 - -
Lcy10g1281 743 FunFam Fibrillin 2 282 327 - -
Lcy10g1281 743 Pfam Wall-associated receptor kinase galacturonan-binding 35 91 IPR025287 GO:0030247(InterPro)
Lcy10g1281 743 Pfam Protein tyrosine and serine/threonine kinase 417 682 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1281 743 CDD STKc_IRAK 418 685 - -
Lcy10g1281 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1281 743 SMART serkin_6 412 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1281 743 ProSitePatterns Calcium-binding EGF-like domain signature. 287 314 IPR018097 GO:0005509(InterPro)
Lcy10g1281 743 SUPERFAMILY Protein kinase-like (PK-like) 390 683 IPR011009 -
Lcy10g1281 743 ProSiteProfiles EGF-like domain profile. 287 326 IPR000742 -
Lcy10g1281 743 FunFam Wall-associated receptor kinase 2 382 487 - -
Lcy10g1281 743 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524(InterPro)
Lcy10g1281 743 Gene3D Phosphorylase Kinase; domain 1 384 487 - -
Lcy10g1281 743 CDD EGF_CA 287 323 - -
Lcy10g1281 743 Gene3D Transferase(Phosphotransferase) domain 1 488 705 - -
Lcy10g1281 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 696 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1281 743 ProSiteProfiles Protein kinase domain profile. 412 695 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1281 743 FunFam Wall-associated receptor kinase 2 488 706 - -
Lcy10g1281 743 SMART egfca_6 287 332 IPR001881 GO:0005509(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1281 Lcy-Chr10:35593004 Lcy10g1285 Lcy-Chr10:35659156 0 dispersed
Lcy10g1281 Lcy-Chr10:35593004 Lcy10g1283 Lcy-Chr10:35625683 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65384 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1281 - - - 0.0