Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g1283 | ATGGTGATGAAGATAGCCATGTTGTCAACGGCCTTGGCCGTAGTAGCTTCTCAAGCCCTACCCGGCTGCGACGAATGGTGTGGCGACCTGCAAATTCCATATCCATTCGGCACGAGAAATGGGTGTTATCTCAATGAAACATTCTCAATTACTTGCAACAAAACCGATGGCAATAAACCTCCAAAGGCGTTTCTAAAGAACACCAACATCAGCGTTACCAATATATCTATGGATGGTGAGCTCCACATCTTGCAGCCCATAGTGCGAGATTGTTACAAGCCAGTCGCTGGTCCTTTTGTTCCCAACCTAACCAATCTTTCGGTGCCGGCCATGTTCCCAATTGCTGATGGCAAAAACAAGTTCACGACCATCGGCTGCGATGCTTTGGGTTTAGTCCTCGGGGTGCTCAACGGGAGTGATTATGCAAGTGGGTGTATTTCGATGTGTTTCAACGATAGTATTATAAATAATGGGACGTGCTCTGGAAATGGGTGCTGTCAGTTGGAGATTCCAAATGGGTTGAGGGATTTGACTTTGCAGGTGAGTACAGTCTTGAATTACACATTAGCACCAAATTTCAGTTCGTGTGGGTATGCTTTTGTAACCGGAGATGAGGGGTTCGAGTTTTCGTCAACTTATATTGAGAATTTTGAAGATGAGGAAGTTGAGGTTGTGGTTGGTTGGGCCATTGGAAAAGAAACAAAAAATGTATGTGGATCAAACAGCAAAAGGAATAGTAGCTTCTCTGGTGATGGATCTGAATATCGTTGCCAATGCTTGGATGGTTTTGAGGGGAATCCATATCTTCCTCAAGGTTGTCAAGATATAGATGAATGCAAGGATGAAACGCTAAATGATTGTATGTACAAGAACAAGTGTGTTAACACAATAGGAAACTATACCTGCAATTGTCCCAAGAACTTTAAAGGAGATGGAAGACATGGGGGAGAAGGTTGCATCCGAAATTCCAAGACAATTCCGATCATCATCGGAACTGCGGTAGGGTTCACAGTTTTACTAATTGGCAGCATCTGGATATACTTGGGCTACAAAAAATGGAAGTTCATCAAACAGAAAGAGGAATTTTTCCAGAAAAATGGAGGGTTCATACTTCAACGGCAACTTTCTCAATGGCAATCGCAGAATGAGATGGTCAGAATTTTCACCCAAGAAGAGTTGGAGAAAGCCACCAACAACTACGACCACACCACTATTGTCGGCAAAGGTGGCTATGGCACCGTTTACAAAGGAGTCTTGGACGATGGTCTAACCGTTGCTATCAAGAAATCTAAATTCGTGGACCAATCTCAAACCGCCCAATTCATCAATGAGGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTGAAGCTCTTGGGGTGTTGTTTGGAGACACAAGTTCCATTGCTGGTCTATGAATTCATCAACAACGGTACACTTTTTGACCACATCCATGACAAAACCAAGCAGGTTTCCCTTTCTTGGGAAGCTCGCTTGAAAATAGCTTTGGAAACTGCTGGCGTCCTTTCGTATTTGCATTCTTCGGCTTCTACTCCCATCATCCACAGAGATATCAAGACCACTAACATACTTTTAGACCATAATTACACTGCAAAGGTCTCTGATTTCGGTGCTTCGAAGTTGGTTCCTTTGGATCAAACTCAGCTATCTACATTGGTGCAAGGGACTCTTGGATATTTAGACCCTGAATACTTACTGACAAGTGAGTTGACGGAGAAAAGCGATGTGTACAGCTTTGGAATTGTGCTTCTGGAGCTTATAACTGGAAAGAAGGCGGTGAGTTTTGGTGGGCCAGAAGAAGAGAGAAATCTAGCCACGTATGCCCTGTGTGCAATGAAAGAAGAGCGCTTGGAAGAAGTTATAGAGATGGGACTTGTGAGAGAGGCGAACTTTGAGCAAATAAAAGAAGTAGCTAAGCTAGCGGGAAATTGTTTAAGAATCAAAGGGGAGGAGCGACCCAGCATGAAGGAAGTAGCTATGGAGTTGGAGGGACTGCGAGTGATGAAAGTTGAGCATTGA | 2043 | 43.81 | MVMKIAMLSTALAVVASQALPGCDEWCGDLQIPYPFGTRNGCYLNETFSITCNKTDGNKPPKAFLKNTNISVTNISMDGELHILQPIVRDCYKPVAGPFVPNLTNLSVPAMFPIADGKNKFTTIGCDALGLVLGVLNGSDYASGCISMCFNDSIINNGTCSGNGCCQLEIPNGLRDLTLQVSTVLNYTLAPNFSSCGYAFVTGDEGFEFSSTYIENFEDEEVEVVVGWAIGKETKNVCGSNSKRNSSFSGDGSEYRCQCLDGFEGNPYLPQGCQDIDECKDETLNDCMYKNKCVNTIGNYTCNCPKNFKGDGRHGGEGCIRNSKTIPIIIGTAVGFTVLLIGSIWIYLGYKKWKFIKQKEEFFQKNGGFILQRQLSQWQSQNEMVRIFTQEELEKATNNYDHTTIVGKGGYGTVYKGVLDDGLTVAIKKSKFVDQSQTAQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFINNGTLFDHIHDKTKQVSLSWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPLDQTQLSTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFGGPEEERNLATYALCAMKEERLEEVIEMGLVREANFEQIKEVAKLAGNCLRIKGEERPSMKEVAMELEGLRVMKVEH | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35625683 | 35629071 | - | Maker00008591 | Lcy10g1283 | 644794 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g1283 | 680 | FunFam | Fibrillin 2 | 270 | 315 | - | - | |
Lcy10g1283 | 680 | SUPERFAMILY | EGF/Laminin | 274 | 312 | - | - | |
Lcy10g1283 | 680 | FunFam | Wall-associated receptor kinase 2 | 370 | 475 | - | - | |
Lcy10g1283 | 680 | Pfam | Protein tyrosine and serine/threonine kinase | 405 | 670 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g1283 | 680 | Pfam | Wall-associated receptor kinase galacturonan-binding | 23 | 79 | IPR025287 | GO:0030247(InterPro) | |
Lcy10g1283 | 680 | Gene3D | Laminin | 232 | 320 | - | - | |
Lcy10g1283 | 680 | ProSitePatterns | Protein kinases ATP-binding region signature. | 406 | 429 | IPR017441 | GO:0005524(InterPro) | |
Lcy10g1283 | 680 | FunFam | Wall-associated receptor kinase 2 | 476 | 680 | - | - | |
Lcy10g1283 | 680 | CDD | EGF_CA | 275 | 311 | - | - | |
Lcy10g1283 | 680 | Gene3D | Phosphorylase Kinase; domain 1 | 371 | 475 | - | - | |
Lcy10g1283 | 680 | CDD | STKc_IRAK | 406 | 673 | - | - | |
Lcy10g1283 | 680 | SMART | serkin_6 | 400 | 673 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy10g1283 | 680 | Gene3D | Transferase(Phosphotransferase) domain 1 | 476 | 679 | - | - | |
Lcy10g1283 | 680 | ProSiteProfiles | Protein kinase domain profile. | 400 | 680 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy10g1283 | 680 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 19 | 674 | IPR045274 | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro) | |
Lcy10g1283 | 680 | Pfam | Calcium-binding EGF domain | 275 | 309 | IPR049883 | - | |
Lcy10g1283 | 680 | ProSiteProfiles | EGF-like domain profile. | 275 | 314 | IPR000742 | - | |
Lcy10g1283 | 680 | SMART | egfca_6 | 275 | 320 | IPR001881 | GO:0005509(InterPro) | |
Lcy10g1283 | 680 | ProSitePatterns | Aspartic acid and asparagine hydroxylation site. | 293 | 304 | IPR000152 | - | |
Lcy10g1283 | 680 | ProSitePatterns | Calcium-binding EGF-like domain signature. | 275 | 302 | IPR018097 | GO:0005509(InterPro) | |
Lcy10g1283 | 680 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 521 | 533 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy10g1283 | 680 | SUPERFAMILY | Protein kinase-like (PK-like) | 378 | 671 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1283 | Lcy-Chr10:35625683 | Lcy10g1291 | Lcy-Chr10:35789184 | 0 | dispersed | |
Lcy10g1281 | Lcy-Chr10:35593004 | Lcy10g1283 | Lcy-Chr10:35625683 | 0 | proximal | |
Lcy10g1283 | Lcy-Chr10:35625683 | Lcy10g1285 | Lcy-Chr10:35659156 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65385 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g1283 | - | - | - | 0.0 |