Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1283 ATGGTGATGAAGATAGCCATGTTGTCAACGGCCTTGGCCGTAGTAGCTTCTCAAGCCCTACCCGGCTGCGACGAATGGTGTGGCGACCTGCAAATTCCATATCCATTCGGCACGAGAAATGGGTGTTATCTCAATGAAACATTCTCAATTACTTGCAACAAAACCGATGGCAATAAACCTCCAAAGGCGTTTCTAAAGAACACCAACATCAGCGTTACCAATATATCTATGGATGGTGAGCTCCACATCTTGCAGCCCATAGTGCGAGATTGTTACAAGCCAGTCGCTGGTCCTTTTGTTCCCAACCTAACCAATCTTTCGGTGCCGGCCATGTTCCCAATTGCTGATGGCAAAAACAAGTTCACGACCATCGGCTGCGATGCTTTGGGTTTAGTCCTCGGGGTGCTCAACGGGAGTGATTATGCAAGTGGGTGTATTTCGATGTGTTTCAACGATAGTATTATAAATAATGGGACGTGCTCTGGAAATGGGTGCTGTCAGTTGGAGATTCCAAATGGGTTGAGGGATTTGACTTTGCAGGTGAGTACAGTCTTGAATTACACATTAGCACCAAATTTCAGTTCGTGTGGGTATGCTTTTGTAACCGGAGATGAGGGGTTCGAGTTTTCGTCAACTTATATTGAGAATTTTGAAGATGAGGAAGTTGAGGTTGTGGTTGGTTGGGCCATTGGAAAAGAAACAAAAAATGTATGTGGATCAAACAGCAAAAGGAATAGTAGCTTCTCTGGTGATGGATCTGAATATCGTTGCCAATGCTTGGATGGTTTTGAGGGGAATCCATATCTTCCTCAAGGTTGTCAAGATATAGATGAATGCAAGGATGAAACGCTAAATGATTGTATGTACAAGAACAAGTGTGTTAACACAATAGGAAACTATACCTGCAATTGTCCCAAGAACTTTAAAGGAGATGGAAGACATGGGGGAGAAGGTTGCATCCGAAATTCCAAGACAATTCCGATCATCATCGGAACTGCGGTAGGGTTCACAGTTTTACTAATTGGCAGCATCTGGATATACTTGGGCTACAAAAAATGGAAGTTCATCAAACAGAAAGAGGAATTTTTCCAGAAAAATGGAGGGTTCATACTTCAACGGCAACTTTCTCAATGGCAATCGCAGAATGAGATGGTCAGAATTTTCACCCAAGAAGAGTTGGAGAAAGCCACCAACAACTACGACCACACCACTATTGTCGGCAAAGGTGGCTATGGCACCGTTTACAAAGGAGTCTTGGACGATGGTCTAACCGTTGCTATCAAGAAATCTAAATTCGTGGACCAATCTCAAACCGCCCAATTCATCAATGAGGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTGAAGCTCTTGGGGTGTTGTTTGGAGACACAAGTTCCATTGCTGGTCTATGAATTCATCAACAACGGTACACTTTTTGACCACATCCATGACAAAACCAAGCAGGTTTCCCTTTCTTGGGAAGCTCGCTTGAAAATAGCTTTGGAAACTGCTGGCGTCCTTTCGTATTTGCATTCTTCGGCTTCTACTCCCATCATCCACAGAGATATCAAGACCACTAACATACTTTTAGACCATAATTACACTGCAAAGGTCTCTGATTTCGGTGCTTCGAAGTTGGTTCCTTTGGATCAAACTCAGCTATCTACATTGGTGCAAGGGACTCTTGGATATTTAGACCCTGAATACTTACTGACAAGTGAGTTGACGGAGAAAAGCGATGTGTACAGCTTTGGAATTGTGCTTCTGGAGCTTATAACTGGAAAGAAGGCGGTGAGTTTTGGTGGGCCAGAAGAAGAGAGAAATCTAGCCACGTATGCCCTGTGTGCAATGAAAGAAGAGCGCTTGGAAGAAGTTATAGAGATGGGACTTGTGAGAGAGGCGAACTTTGAGCAAATAAAAGAAGTAGCTAAGCTAGCGGGAAATTGTTTAAGAATCAAAGGGGAGGAGCGACCCAGCATGAAGGAAGTAGCTATGGAGTTGGAGGGACTGCGAGTGATGAAAGTTGAGCATTGA 2043 43.81 MVMKIAMLSTALAVVASQALPGCDEWCGDLQIPYPFGTRNGCYLNETFSITCNKTDGNKPPKAFLKNTNISVTNISMDGELHILQPIVRDCYKPVAGPFVPNLTNLSVPAMFPIADGKNKFTTIGCDALGLVLGVLNGSDYASGCISMCFNDSIINNGTCSGNGCCQLEIPNGLRDLTLQVSTVLNYTLAPNFSSCGYAFVTGDEGFEFSSTYIENFEDEEVEVVVGWAIGKETKNVCGSNSKRNSSFSGDGSEYRCQCLDGFEGNPYLPQGCQDIDECKDETLNDCMYKNKCVNTIGNYTCNCPKNFKGDGRHGGEGCIRNSKTIPIIIGTAVGFTVLLIGSIWIYLGYKKWKFIKQKEEFFQKNGGFILQRQLSQWQSQNEMVRIFTQEELEKATNNYDHTTIVGKGGYGTVYKGVLDDGLTVAIKKSKFVDQSQTAQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFINNGTLFDHIHDKTKQVSLSWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPLDQTQLSTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFGGPEEERNLATYALCAMKEERLEEVIEMGLVREANFEQIKEVAKLAGNCLRIKGEERPSMKEVAMELEGLRVMKVEH 680
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 35625683 35629071 - Maker00008591 Lcy10g1283 644794
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1283 680 FunFam Fibrillin 2 270 315 - -
Lcy10g1283 680 SUPERFAMILY EGF/Laminin 274 312 - -
Lcy10g1283 680 FunFam Wall-associated receptor kinase 2 370 475 - -
Lcy10g1283 680 Pfam Protein tyrosine and serine/threonine kinase 405 670 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1283 680 Pfam Wall-associated receptor kinase galacturonan-binding 23 79 IPR025287 GO:0030247(InterPro)
Lcy10g1283 680 Gene3D Laminin 232 320 - -
Lcy10g1283 680 ProSitePatterns Protein kinases ATP-binding region signature. 406 429 IPR017441 GO:0005524(InterPro)
Lcy10g1283 680 FunFam Wall-associated receptor kinase 2 476 680 - -
Lcy10g1283 680 CDD EGF_CA 275 311 - -
Lcy10g1283 680 Gene3D Phosphorylase Kinase; domain 1 371 475 - -
Lcy10g1283 680 CDD STKc_IRAK 406 673 - -
Lcy10g1283 680 SMART serkin_6 400 673 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1283 680 Gene3D Transferase(Phosphotransferase) domain 1 476 679 - -
Lcy10g1283 680 ProSiteProfiles Protein kinase domain profile. 400 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1283 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 674 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1283 680 Pfam Calcium-binding EGF domain 275 309 IPR049883 -
Lcy10g1283 680 ProSiteProfiles EGF-like domain profile. 275 314 IPR000742 -
Lcy10g1283 680 SMART egfca_6 275 320 IPR001881 GO:0005509(InterPro)
Lcy10g1283 680 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 293 304 IPR000152 -
Lcy10g1283 680 ProSitePatterns Calcium-binding EGF-like domain signature. 275 302 IPR018097 GO:0005509(InterPro)
Lcy10g1283 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1283 680 SUPERFAMILY Protein kinase-like (PK-like) 378 671 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1283 Lcy-Chr10:35625683 Lcy10g1291 Lcy-Chr10:35789184 0 dispersed
Lcy10g1281 Lcy-Chr10:35593004 Lcy10g1283 Lcy-Chr10:35625683 0 proximal
Lcy10g1283 Lcy-Chr10:35625683 Lcy10g1285 Lcy-Chr10:35659156 0 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65385 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1283 - - - 0.0