Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1285 ATGGGGCGTCCAATTGAGACGCTTATTCGACTCGCGGTGGTGAACATAGCCATCTTATCGGTGGCTTATGTAGCAGCGGCGGTGGCGGCTTCTCAAGCCTTAGCCGGGTGCGACGAATGGTGTGGCGACTTGCAGATTCCATATCCGTTCGGCACGAGGGAAGGGTGTTATCTGAATGAAGATTTCTTCATCAACTGTAACAAAACTCATTACGATCCTCCAAAGGCATTTCTAGGGAGCGGCAACCTTAATGTCACAAATATATCCATCTCCGGAGAGTTCCAAATCTTGCATTTCATGGCCCAAGATTGCTACCCGCGAAATAATGCTCTCGATAATTCGGCCAGCGCCTTTCTCAACTTAGCCTATCACACTGTTTCCAGTACCAAAAACAAGTTCATCGTTATCGGCTGCGATACTTTCTCTTTCATTCGTGGCGTATTCGAGGGGCAAACCTACAGAACTGCATGTGTGGCGTTGTGCGATGACATTACCACTGTAAGAGATGGGCGCTGCTCTGGCAATGGATGCTGTCAGTTGGAGATTCCCAATGGCCTAACTAATATAGAGTACGAGGTGAGCAGCTTCAATAATCACGTTAATGTGTCGAGCTTCAATCCGTGTGGGTATGCTTTTCTAATTGAAGAAGACAGGTTCAATTTCTCGTCCAAGTATATTCGCAATTTTCCCCAACAGAGAATTCCGTTGGTGGTTGATTGGGCCATTGCTAACAGTACGTGCTCAGCAGCTGAGAACAAAACTAATTGTATATGTGGGCCAAATAGCAGAAAGGTTGACTTCCTCCCCGATGGCTCTAAATATCGTTGCCAGTGCTTGGAAGGCTTCGAGGGGAATCCATATCTCTCTCAAGGTTGTCAAGATATAGATGAGTGCAAGGATGAAGGGCTGAATAATTGCACGCATGAGTGTGTTAACATAGAAGGAAATTATACTTGCAATTGCCCTGAGGGATTTAAAGGAGATGGAAGACGTGGGGGAGAAGGTTGCATCCCAAAGTCCAAGTCTTTCGTTCAAATCATAGTCGGAGTGACGGTGGGGTTCGCAGTTTTAGTGATTGGGGGTACATGGTTATACTTGGGCTACAGAAAGTGGAAGTTCATTAAACTGAAAGAGAAGTTCTTTGAGAAAAATGGAGGCTTGATGCTTCAACAGCATCTTTCTCAATGGCAATTATCCACCGACATGGTCAGAATTTTCACCAAAGAGGAGCTGGACAAGGCTACAAACAAGTACGACGAAAGTGCAGTGGTCGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTCTTAGACGACGGTTTGGTAGTCGCAATCAAGAAATCAAAATTAGTGGACCAATCCCAAACTTCCCAATTCATTAACGAAGTCATTGTTCTGTCTCAAATCAACCACCGTAACGTGGTAAGGCTCTTGGGGTGTTGTTTAGAGACACAAGTTCCATTGTTGGTGTATGAATTCGTCACCAACGGCACACTTTACGACCACATCCATGAAAAAACAAATCGGGATTCTCTTTCATGGGAAGCCCGCTTGAGAATAGCTTCGGAAACTGCGGGAGTCATTGCATATCTGCATTCTTCAGCTTCCACTCCAATCATCCACAGAGATATCAAGACAACCAACATACTTTTAGACGATAATTACACAGCAAAGGTCTCTGACTTCGGTGCTTCAAAGTTGGTTCCTGTGGATCAAACTCAATTATCCACGATGGTGCAAGGAACTCTAGGATATTTGGACCCAGAATACTTGTTGACGAGTGAGTTGACAGAGAAGAGCGACGTGTATAGCTTTGGAATTGTACTTCTGGAGCTTATAACTGGGAAGAAGGCGGTGAGTTTCGAGGGGCCAGAGTCGGAGAGGAACCTAGCGATGTACGTCCTGTGTGCAATGAAGGAAGATCGTTTGGTAGAAGTTGTGGAGAAGGGAATGGCGACGAGGGCAAACTTTGAGCAGCTAAAGGAAGTGACGAAGTTAGCAACAAAGTGCTTGAGGATAAGTGGGGAGGACCGACCCAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGACTGAGATTGATGATTGAGCATCAATGGACTAATAACAAAGAGAACCCAGGAGAGATGGTGGCTTATTTGCTGCAGGATGGAGCTTCAGAATCGACATCGAACCAGTTTCTTGTGAGTGGAAGCACAAATGTTGTGGACGACAGCATGAAACTTTGTCCCATAATTTCCTTAGATCATCGGGATTTGATCGTCTCCGTATATCATGCTAAATCAAACAGTAATACAAAAATCTACAGCAATAAGATTACGACACAATTAGACATGAGGCGTCCAATGGAGACGCTCATTCAACTGACGGCGGTCAAGATGGCCATTTTATCGGCAGTGGCAGCGGCGGCGGCGGCAGCTTCTCAAGCCTTACCCGGGTGCGACGAGTGGTGCGGCGACTTGCAGATTCCATATCCATTCGGCGTGAGAGAAGGGTGTTATCTAAATGAAAATTTCTTCATTGCGTGTAACTCAACTCATTACGATTCTCCAAAGGCATTTCTAGGTGGCGGCAACCTTATGGTTACAAATATATTCATCTCCGGGGAGCTTCAGATTTTGCACTTCGTGGCCCGAGATTGCTACCCCACAAATAACGGCCCGGATCTAACCAGCATCTATCTCTCCGTACCTACGTACACTATTTCCAGTACCAAAAACAAGTTCACCGTGATCGGCTGTGATACTTATGCTTATATTTACGGTCAGGGTCAAACCTACAGAACTGCATGCGTGGCGTTGTGTGATGATATTACCACCGTGAGAGATGGGGCCTGCTCCGGCAATGGGTGCTGTCAATTGGAGATTCCCAATGGCTTAAACTTTTTGGAGTACAAGGTGAGTAGCTTCAACAATCACATTAATGTGACCAGTTTCAATCCTTGTGGGTATGCCTTTTTAATTGAAGAAGACAAGTTCAATTTCTCGTCGAGGTATATCCGCGATTTCCCCCACGAAAGAATTCCATTGGTGCTTGATTGGGCCATTAGTAACAAAACCAATTGTATATGTGGGCCGAATAGTAAAAAGGTGAGCTTTCTTGATGATAGAGCTGAATATCGATGCCAGTGCTTGGAAGGCTTTGAAGGGAATCCATATCTCCCTCAAGGTTGTCAAGATGTAGATGAGTGCCAAGATGAAAGACTTCATGACTGCACGTATGAGTGTGTTAACACAATAGGAAACTATACTTGCAATTGTCCTAAGGACTTTAAAGGAGATGGAAGACGTGGGGGAGAAGGTTGCACCCGAAACTCCATTTTCGTTCAAGTCATCGTGGGAATTACTGTGGGGTTCATCGTTTTAGTGATTGCGAGTACGTGGTTATACTTGTGTTATAGAAAGTGGAAGTTCATCAAATTGAAAGAGAAGTTTTTTGAGAAAAATGGAGGCTTGATGCTTCAACAGCATCTTTCTCAATGGCAATTATCCACCGACATGGTCAGGATTTTCACCCAAGAGGAGTTGGACAAGGCTACAAACAAGTACGATGAAAGTGCAGTGATCGGAAAAGGTGGCTATGGTACTGTTTATAAAGGAGTCTTAGAGGACGGTTTGGTAGTTGCAATTAAGAAATCAAAATTAGTGGACCAATCCCAAACTTCCCAATTCATTAATGAAGTTATCGTTTTGTCCCAAATCAACCATCGTAATGTAGTCAGGCTCTTAGGATGTTGTTTCGAGACACAGGTTCCATTGTTGGTGTACGAGTTCATCACTAATGGCACACTTTACGACCACCTCCATGAAAAAACCAATCACGATTCTCTTTCTTGGGAAGCTCGCTTGAGAATAGCTTCGGAAACTGCAGGGGTCGTTTCATATTTGCACTCTTCAGCTTCCACTCCAATTATCCACAGAGATATCAAGACGACTAACATACTTTTAGACGACAATTACATAGCAAAGGTATCTGATTTCGGTGCTTCAAAGTTGGTTCCAATGGATCAAACTCAATTATCCACAATGGTACAAGGGACTCTAGGATATTTAGACCCAGAATACTTGTTGACAAGCGAGTTGACGGAGAAAAGTGACGTGTACAGCTTTGCAATTGTGCTTCTAGAGCTTATAACTGGGAAGAAGGCAGTGAGTTTCGAGGGGCCGGAAGCAGAGAGAAATCTAGCTATGTACGTCCGGTGTGCAATGAAGGAAGATCGTTTGGTAGAAGTTGTGGAGAAGGAAATGGCAACGGAAGCGAACTTTGAACAGATAAAAGAAACGACCATGTTAGCAACAAAGTGTTTGAGAATGAGTGGGGAGGAGCGACCCAGCATGAAGGAGGTAGCTATGGAGTTGGAGAGGCTGAGAACGATTGGTTGA 4380 44.75 MGRPIETLIRLAVVNIAILSVAYVAAAVAASQALAGCDEWCGDLQIPYPFGTREGCYLNEDFFINCNKTHYDPPKAFLGSGNLNVTNISISGEFQILHFMAQDCYPRNNALDNSASAFLNLAYHTVSSTKNKFIVIGCDTFSFIRGVFEGQTYRTACVALCDDITTVRDGRCSGNGCCQLEIPNGLTNIEYEVSSFNNHVNVSSFNPCGYAFLIEEDRFNFSSKYIRNFPQQRIPLVVDWAIANSTCSAAENKTNCICGPNSRKVDFLPDGSKYRCQCLEGFEGNPYLSQGCQDIDECKDEGLNNCTHECVNIEGNYTCNCPEGFKGDGRRGGEGCIPKSKSFVQIIVGVTVGFAVLVIGGTWLYLGYRKWKFIKLKEKFFEKNGGLMLQQHLSQWQLSTDMVRIFTKEELDKATNKYDESAVVGKGGYGTVYKGVLDDGLVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFVTNGTLYDHIHEKTNRDSLSWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPVDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPESERNLAMYVLCAMKEDRLVEVVEKGMATRANFEQLKEVTKLATKCLRISGEDRPSMKEVAMELEGLRLMIEHQWTNNKENPGEMVAYLLQDGASESTSNQFLVSGSTNVVDDSMKLCPIISLDHRDLIVSVYHAKSNSNTKIYSNKITTQLDMRRPMETLIQLTAVKMAILSAVAAAAAAASQALPGCDEWCGDLQIPYPFGVREGCYLNENFFIACNSTHYDSPKAFLGGGNLMVTNIFISGELQILHFVARDCYPTNNGPDLTSIYLSVPTYTISSTKNKFTVIGCDTYAYIYGQGQTYRTACVALCDDITTVRDGACSGNGCCQLEIPNGLNFLEYKVSSFNNHINVTSFNPCGYAFLIEEDKFNFSSRYIRDFPHERIPLVLDWAISNKTNCICGPNSKKVSFLDDRAEYRCQCLEGFEGNPYLPQGCQDVDECQDERLHDCTYECVNTIGNYTCNCPKDFKGDGRRGGEGCTRNSIFVQVIVGITVGFIVLVIASTWLYLCYRKWKFIKLKEKFFEKNGGLMLQQHLSQWQLSTDMVRIFTQEELDKATNKYDESAVIGKGGYGTVYKGVLEDGLVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVRLLGCCFETQVPLLVYEFITNGTLYDHLHEKTNHDSLSWEARLRIASETAGVVSYLHSSASTPIIHRDIKTTNILLDDNYIAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFAIVLLELITGKKAVSFEGPEAERNLAMYVRCAMKEDRLVEVVEKEMATEANFEQIKETTMLATKCLRMSGEERPSMKEVAMELERLRTIG 1459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35659156 35664472 + Maker00008369 Lcy10g1285 644796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1285 1459 Gene3D Phosphorylase Kinase; domain 1 389 493 - -
Lcy10g1285 1459 Gene3D Phosphorylase Kinase; domain 1 1153 1257 - -
Lcy10g1285 1459 Pfam Wall-associated receptor kinase galacturonan-binding 37 92 IPR025287 GO:0030247(InterPro)
Lcy10g1285 1459 ProSitePatterns Calcium-binding EGF-like domain signature. 294 319 IPR018097 GO:0005509(InterPro)
Lcy10g1285 1459 Gene3D Plasmodium vivax P25 domain 237 342 - -
Lcy10g1285 1459 CDD STKc_IRAK 424 691 - -
Lcy10g1285 1459 FunFam Fibrillin 2 1054 1097 - -
Lcy10g1285 1459 SUPERFAMILY Protein kinase-like (PK-like) 1160 1452 IPR011009 -
Lcy10g1285 1459 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 710 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1285 1459 Pfam Protein tyrosine and serine/threonine kinase 1186 1452 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1285 1459 Pfam Protein tyrosine and serine/threonine kinase 423 688 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1285 1459 ProSitePatterns Protein kinases ATP-binding region signature. 1188 1211 IPR017441 GO:0005524(InterPro)
Lcy10g1285 1459 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Lcy10g1285 1459 FunFam Fibrillin 2 289 332 - -
Lcy10g1285 1459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1303 1315 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1285 1459 SUPERFAMILY EGF/Laminin 293 329 - -
Lcy10g1285 1459 FunFam Wall-associated receptor kinase 2 1152 1257 - -
Lcy10g1285 1459 FunFam Wall-associated receptor kinase 2 388 493 - -
Lcy10g1285 1459 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1075 1086 IPR000152 -
Lcy10g1285 1459 ProSitePatterns Calcium-binding EGF-like domain signature. 1059 1084 IPR018097 GO:0005509(InterPro)
Lcy10g1285 1459 SUPERFAMILY EGF/Laminin 1058 1094 - -
Lcy10g1285 1459 ProSiteProfiles EGF-like domain profile. 294 328 IPR000742 -
Lcy10g1285 1459 CDD EGF_CA 1059 1093 - -
Lcy10g1285 1459 SMART serkin_6 1182 1455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1285 1459 SMART serkin_6 418 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1285 1459 SMART egfca_6 294 337 IPR001881 GO:0005509(InterPro)
Lcy10g1285 1459 SMART egfca_6 1059 1102 IPR001881 GO:0005509(InterPro)
Lcy10g1285 1459 CDD EGF_CA 294 328 - -
Lcy10g1285 1459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1285 1459 Gene3D Transferase(Phosphotransferase) domain 1 494 712 - -
Lcy10g1285 1459 Gene3D Transferase(Phosphotransferase) domain 1 1258 1458 - -
Lcy10g1285 1459 SUPERFAMILY Protein kinase-like (PK-like) 396 689 IPR011009 -
Lcy10g1285 1459 Gene3D Laminin 1014 1101 - -
Lcy10g1285 1459 SMART egf_5 297 337 IPR000742 -
Lcy10g1285 1459 SMART egf_5 1062 1102 IPR000742 -
Lcy10g1285 1459 SMART egf_5 246 293 IPR000742 -
Lcy10g1285 1459 ProSiteProfiles Protein kinase domain profile. 418 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1285 1459 FunFam Wall-associated receptor kinase 2 1258 1459 - -
Lcy10g1285 1459 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524(InterPro)
Lcy10g1285 1459 CDD STKc_IRAK 1188 1455 - -
Lcy10g1285 1459 Pfam Calcium-binding EGF domain 294 326 IPR049883 -
Lcy10g1285 1459 Pfam Calcium-binding EGF domain 1059 1091 IPR049883 -
Lcy10g1285 1459 FunFam Wall-associated receptor kinase 2 494 710 - -
Lcy10g1285 1459 ProSiteProfiles Protein kinase domain profile. 1182 1455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1281 Lcy-Chr10:35593004 Lcy10g1285 Lcy-Chr10:35659156 0 dispersed
Lcy10g1285 Lcy-Chr10:35659156 Lcy10g1287 Lcy-Chr10:35722679 0 dispersed
Lcy4g1019 Lcy-Chr4:18273942 Lcy10g1285 Lcy-Chr10:35659156 7.64E-38 dispersed
Lcy10g1283 Lcy-Chr10:35625683 Lcy10g1285 Lcy-Chr10:35659156 0 proximal
Lcy10g1285 Lcy-Chr10:35659156 Lcy10g1286 Lcy-Chr10:35693674 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65386 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1285 - - - 0.0