Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1286 ATGGGACGACATCCAGCGGATAAGCTTGTTCGACTTATGATGATAATTTTATCAACAGCTTTAGCTGGATCAGCGTGGCTGTCACCAGAATGCGAGCACCAGCGGTGTGGGAGCTTGGAAATTCCATATCCATTCGGGATGAAGAAAGAGTGTTATCTCAATGAAATTTTCTTGATCACCTGCAACAAAACTCATTATGATCCTCCAAAGGCATTTCTACGGGACAGCAACATTGATGTAACGAATATATCCATCCACGGCGAGCTCCACATCATGAATTACATAGCCAGTGATTGCTACACACAAAATGGTTCCAATTCCTTCGACGATCCCACTCTTGAATTGTCCATGTTCACAATTTCCCATGCCAAAAACAAGTTCACGGTCATCGGTTGCGATACTTATGCTTTCATTTACGGCCAACTCGAGGGGGAATCCTACAAAAGTGGGTGCATGGCGCTGTGTGGAAACACTACTCGAAATATAAGAAATGGGTCTTGCTCTGGCAATGGGTGTTGTCAGTTGCAGATTCCTAGAGGCCTAAAAAATTTGAAGTTGGAGGTTAGAAGCTTCAGCAATCACACTGGCGTACTCGACTTCAATTCCTGTGGGTATGCTTTTGTAATCGAACAAGACAGCTTCAATTTCTCCTCCAAATATATTAAGAATTTCACACATGAGGAAGTTCTGCTGGTGCTTGATTGGGCGATCCCAATTGATGCTTGCTCAAAAGCTGAGAACAAAACCAATTGCGTAATATGTGGACCAAACAGCAAAAAAATCGATTTCCTCTCGGATGGATCTGAATATCGTTGTAAATGTTTGGATGGTTTCGAGGGGAATCCATATCTCCCTCAAGGTTGTCAAGATGTAGACGAATGCATGGATGAAAGCCTAAATGATTGTGAGAATAAGAACATGTGTATTAACACATTCGGAAACTATACCTGCCATTGTCCTAAAAACTCTAAAGGAGATGGAAGAAAAAGGGGAAAAGGATGCATCCGGGACTATAAGGCCTTCATTCAAACCATCGCGGGATTTGTGGTAGGGTTCACAATTTTAGTGTTGGGCAGCACATGGTTATGCTTGGGTTACGAAAAGTGGAAGCTCATCCAACGAAAGAACAAGTTTTTCATGAAAAATGGAGGCTTGGTGCTTCAACAACATCTTTCTCAGTCGCAATCACCCATGGAGATGCTTAGAATTTTCACCGAAGAAGAGTTGAAGAGGGCTACAAACAAGTTCAACGATAGTGCAGTGGTGGGCAAAGGTGGCTACGGTACCGTTTACAAAGGAGTCTTAGACGACGGTTCCATAGTCGCAATCAAGAAATCAAAACTAGTGGACCAATCCCAAACCGACCAATTCATTAACGAAGTCATTGTTCTCTCACAAATCAATCATCGGAATGTGGTGAGACTCTTGGGATGCTGTTTGGAGACGCAAGTTCCATTGTTAGTTTACGAGTTCATAGCCAACGGCACCCTCTTCGAACACATCCACGACAAAGCCAAGCATGCTTCTCTTTCATGGGAAACTCGTTTGAAAATAGCTTCAGAAACTGCCAATGTCCTCTCGTATTTGCATTGTTCAACTTCTACTCCCATTATTCACAGAGATATCAAGTCTACTAATATACTTTTAGACCAAAATTACACTGCAAAGGTCTCTGATTTCGGAGCTTCAAAACTAGTTCCTCTGGATCATACTCAAATAGCCACGATAGTGCAAGGGACTCTTGGATATTTGGATCCAGAATACTTGTTGACAAGTGAGTTGACAGAGAAGAGCGACGTGTACAGCTTTGGAATTGTGCTTTTGGAGCTTATAACTGGGAAGAAGGCCGTGCGTGCTGATGGGCCAGAAGTGGAGAGAAATCTAGCCATGTATGTCCTGTGTGCGATGAAAGAAGATCGTTTGGAAGCGGTTGTGGACAAGGGAATGGTAACGGAGGAAAACATCGAGCAGATAAAAGAAGTGGCAAAGCTCGCAAAAGAGTGTGTAGGAGTAAAAGGGGAGGAGCGGCCCACCATGAAGGAGGTAGCTATGGAGTTGGAGGGGCTGCGGCTGGAGCAGGTTGAGCATTTCAATATGTTGGATGGAACTTCTTCAGACTCGACCCAATTTGTTGTTAGTGGCAATATGAGTGCTACGGACCATAGCATAAAGGCTCAGATTTTGTCTCATATCGTCCATCATGGAAGATGA 2211 43.55 MGRHPADKLVRLMMIILSTALAGSAWLSPECEHQRCGSLEIPYPFGMKKECYLNEIFLITCNKTHYDPPKAFLRDSNIDVTNISIHGELHIMNYIASDCYTQNGSNSFDDPTLELSMFTISHAKNKFTVIGCDTYAFIYGQLEGESYKSGCMALCGNTTRNIRNGSCSGNGCCQLQIPRGLKNLKLEVRSFSNHTGVLDFNSCGYAFVIEQDSFNFSSKYIKNFTHEEVLLVLDWAIPIDACSKAENKTNCVICGPNSKKIDFLSDGSEYRCKCLDGFEGNPYLPQGCQDVDECMDESLNDCENKNMCINTFGNYTCHCPKNSKGDGRKRGKGCIRDYKAFIQTIAGFVVGFTILVLGSTWLCLGYEKWKLIQRKNKFFMKNGGLVLQQHLSQSQSPMEMLRIFTEEELKRATNKFNDSAVVGKGGYGTVYKGVLDDGSIVAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFIANGTLFEHIHDKAKHASLSWETRLKIASETANVLSYLHCSTSTPIIHRDIKSTNILLDQNYTAKVSDFGASKLVPLDHTQIATIVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRADGPEVERNLAMYVLCAMKEDRLEAVVDKGMVTEENIEQIKEVAKLAKECVGVKGEERPTMKEVAMELEGLRLEQVEHFNMLDGTSSDSTQFVVSGNMSATDHSIKAQILSHIVHHGR 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35693674 35697045 + Maker00008811 Lcy10g1286 644797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1286 736 SMART serkin_6 416 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1286 736 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524(InterPro)
Lcy10g1286 736 Gene3D Laminin 238 335 - -
Lcy10g1286 736 SUPERFAMILY Protein kinase-like (PK-like) 393 686 IPR011009 -
Lcy10g1286 736 FunFam Wall-associated receptor kinase 2 386 491 - -
Lcy10g1286 736 SMART egf_5 293 335 IPR000742 -
Lcy10g1286 736 SMART egf_5 241 289 IPR000742 -
Lcy10g1286 736 Gene3D Phosphorylase Kinase; domain 1 387 491 - -
Lcy10g1286 736 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 698 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1286 736 SUPERFAMILY EGF/Laminin 289 327 - -
Lcy10g1286 736 FunFam Wall-associated receptor kinase 2 492 709 - -
Lcy10g1286 736 Pfam Protein kinase domain 418 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1286 736 CDD STKc_IRAK 422 689 - -
Lcy10g1286 736 ProSiteProfiles EGF-like domain profile. 290 326 IPR000742 -
Lcy10g1286 736 FunFam Fibrillin 2 285 330 - -
Lcy10g1286 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1286 736 ProSitePatterns Calcium-binding EGF-like domain signature. 290 317 IPR018097 GO:0005509(InterPro)
Lcy10g1286 736 Gene3D Transferase(Phosphotransferase) domain 1 492 708 - -
Lcy10g1286 736 Pfam Wall-associated receptor kinase galacturonan-binding 31 87 IPR025287 GO:0030247(InterPro)
Lcy10g1286 736 SMART egfca_6 290 335 IPR001881 GO:0005509(InterPro)
Lcy10g1286 736 CDD EGF_CA 290 320 - -
Lcy10g1286 736 ProSiteProfiles Protein kinase domain profile. 416 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1286 736 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1286 Lcy-Chr10:35693674 Lcy10g1291 Lcy-Chr10:35789184 0 dispersed
Lcy10g1285 Lcy-Chr10:35659156 Lcy10g1286 Lcy-Chr10:35693674 0 tandem
Lcy10g1286 Lcy-Chr10:35693674 Lcy10g1287 Lcy-Chr10:35722679 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65387 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1286 - - - 0.0