Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1287 ATGAATTATATTTGCGGATTAGACATGATACATCCAGCGGAGAAGCTTGTCCGGCTGATGATGATTTTCTCAGCAGTTTTAGTAGCGGCAGCGGCGGCGGCATCACCAGACTGCGACCGACGGTGTGGGAACCTGGAAATTCCATATCCGTTCGGTACAAAGGAAGGGTGTTATCTTAATAAAAATTTCAGGATTATCTGCAACAAAACTCATGATCCTCCAAAGGCAATTCTAGGAGTCAACATTGAAGTGACCAATATATCCATCATCAACGGCGAGCTCCACATCTTGCAATACGTGGCCCGTGATTGCTACAACCAAAGTGGTTTCAATTACTCCAGTAAACCCTTTCTCACAGTACCCATGTTCACTATTTCCAGTACCAAAAACAAGTTCACCGTCATCGGCTGCGATACTTATGCTTTCATCGATGGGAAACTCGGAGGGGAAAACTACACGAGTGGCTGCATGTCATTGTGTGGAAGTATCAGTGCTGTAAGAGATGGCCCCTGCTCCGGCAATGGCTGTTGTCAGTTGGAGATTCCCAAAGGCCTAAAACACTTGGAGTTAGACGTGAAAAGCTTTGATAATCACACTAAGGTTCTCGATTTCAATCCCTGTGGATATGCTTTCGTAATTCAACAAGATAACTTCACTTTCTCCTCCTCGTATCTTCGCAATTTTACACGTGAGAAAGTTCCTCTGGTTCTTGATTGGGCCATCCCAACTGAAACTTGCTCAACGGTTAACAACAAAACCAATTGCACATGTGGACCAAATAGTAAAAAGATCAACTTCCTCGGTGAAAGATCTGAATATCGTTGCCAGTGCTTGGAAGGTTTTGAGGGGAATCCATATCTCTCTCAAGGTTGTCAAGACATAGATGAATGTCAGAATGGAAGTCATGAATGTAAATTCAAAGACGGGTGTGTTAACACACTAGGAAACTATACCTGCAACTGTCCTAAGAATCATAAAGGAGATAGCAGACGTGGGGGAGAAGGTTGCACCCAAAACTCCATGTCTTTCTTTCTTATCATCATCGGAATTGGCGTGGGTTTCACAATTTTAGTGATTGGCAGCGTATGGTTATACTTGGGTTACAAAAAGTGGAAGTTTATCCAACAAAAGCAGAAGTTTTTTCAGAAAAATGGAGGTTTGATGCTTCAACAACATCTTTCTCAATGGCAGTCACCCGCTGACATGCTTAGAATTTTCACTCGAGAAGAGTTAGAGAAGGCTACAAACAACTACAATGAAAGCGTCGTGGTCGGCAAAGGTGGCTTCGGTACCGTTTACAAAGGAATCTTAGATGACGGTTCGATAATCGCAATCAAGAAATCAAAATTGGTGGATCGATCTCAAACTAAACAATTCATCAACGAAGTCATCGTTCTCTCCCAAATCAATCATCGGAACGTGGTCAGGCTCCTTGGGTGTTGTTTGGAGACAAAAGTTCCATTATTGGTGTACGAATTCATCGCTAATGGCACGCTCTTCGAACACATCCATGACAAAACCAAGAATTCTTCTCTTTCTTGGGAAGCTCGATTGAAAATAGCTTCGGAAACTGCCGGTGTCCTCTCCTACTTGCATTCTTCTGCTTCTACTCCCATTATCCACAGAGATATCAAGTCCACTAATATACTTTTAGACAATAATTTCACTGCCAAAGTCTCTGACTTTGGAGCTTCAAAGCTAGTTCCGTTGGATGTTACTCAGATATCCACGATGGTGCAAGGGACTCTTGGATATTTAGACCCTGAATATTTGTTGACGAGTGAGTTGACCGAGAAAAGCGATGTATATAGCTTCGGAATTGTGCTTTTGGAGCTTCTAACTGGGAAGAAGGCGGTGCGTTTTGAGGGGCCAGAAGCTGAGAGGAATTTAGCCATGCATGTCTTGTGTGCGATGAAAGAAGATCGTATTGAAGAAGTTGTGGAGAAGGAAATGGTGACAGAAGCGAGCTTTGAGCAGATAAAAGAAGTGGCAAGACTGGCAAAAATGTGTGTGAGCGTTAAAGGCGAGGAGCGGCCCACCATGAAGGAGGTGGCTATGGAGTTGGAGGGGCTACGACTAATGCAGGTTGAGCATTCATGGGCTAAGGATAATGTGATAGATGGAGCTTCAAACTCGAGTTCATTTATTATCACTAGCAATATGAATACCATGGATTATAGCATAAAGGCTCAAAATTTATCACATATGCCTCAAGGAAGATGA 2223 43.05 MNYICGLDMIHPAEKLVRLMMIFSAVLVAAAAAASPDCDRRCGNLEIPYPFGTKEGCYLNKNFRIICNKTHDPPKAILGVNIEVTNISIINGELHILQYVARDCYNQSGFNYSSKPFLTVPMFTISSTKNKFTVIGCDTYAFIDGKLGGENYTSGCMSLCGSISAVRDGPCSGNGCCQLEIPKGLKHLELDVKSFDNHTKVLDFNPCGYAFVIQQDNFTFSSSYLRNFTREKVPLVLDWAIPTETCSTVNNKTNCTCGPNSKKINFLGERSEYRCQCLEGFEGNPYLSQGCQDIDECQNGSHECKFKDGCVNTLGNYTCNCPKNHKGDSRRGGEGCTQNSMSFFLIIIGIGVGFTILVIGSVWLYLGYKKWKFIQQKQKFFQKNGGLMLQQHLSQWQSPADMLRIFTREELEKATNNYNESVVVGKGGFGTVYKGILDDGSIIAIKKSKLVDRSQTKQFINEVIVLSQINHRNVVRLLGCCLETKVPLLVYEFIANGTLFEHIHDKTKNSSLSWEARLKIASETAGVLSYLHSSASTPIIHRDIKSTNILLDNNFTAKVSDFGASKLVPLDVTQISTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELLTGKKAVRFEGPEAERNLAMHVLCAMKEDRIEEVVEKEMVTEASFEQIKEVARLAKMCVSVKGEERPTMKEVAMELEGLRLMQVEHSWAKDNVIDGASNSSSFIITSNMNTMDYSIKAQNLSHMPQGR 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35722679 35731021 + Maker00008810 Lcy10g1287 644798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1287 740 FunFam Wall-associated receptor kinase 2 494 711 - -
Lcy10g1287 740 CDD STKc_IRAK 424 691 - -
Lcy10g1287 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1287 740 ProSiteProfiles EGF-like domain profile. 293 331 IPR000742 -
Lcy10g1287 740 Pfam Wall-associated receptor kinase galacturonan-binding 38 96 IPR025287 GO:0030247(InterPro)
Lcy10g1287 740 SMART serkin_6 418 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1287 740 FunFam Fibrillin 2 288 332 - -
Lcy10g1287 740 Gene3D Laminin 243 336 - -
Lcy10g1287 740 Gene3D Transferase(Phosphotransferase) domain 1 494 712 - -
Lcy10g1287 740 Pfam Calcium-binding EGF domain 293 326 IPR049883 -
Lcy10g1287 740 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Lcy10g1287 740 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524(InterPro)
Lcy10g1287 740 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 702 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1287 740 CDD EGF_CA 293 329 - -
Lcy10g1287 740 FunFam Wall-associated receptor kinase 2 388 493 - -
Lcy10g1287 740 ProSitePatterns Calcium-binding EGF-like domain signature. 293 319 IPR018097 GO:0005509(InterPro)
Lcy10g1287 740 ProSiteProfiles Protein kinase domain profile. 418 701 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1287 740 Pfam Protein kinase domain 418 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1287 740 SMART egfca_6 293 337 IPR001881 GO:0005509(InterPro)
Lcy10g1287 740 Gene3D Phosphorylase Kinase; domain 1 382 493 - -
Lcy10g1287 740 SUPERFAMILY EGF/Laminin 292 328 - -
Lcy10g1287 740 SUPERFAMILY Protein kinase-like (PK-like) 396 688 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1276 Lcy-Chr10:35555814 Lcy10g1287 Lcy-Chr10:35722679 0 dispersed
Lcy10g1278 Lcy-Chr10:35570950 Lcy10g1287 Lcy-Chr10:35722679 0 dispersed
Lcy10g1285 Lcy-Chr10:35659156 Lcy10g1287 Lcy-Chr10:35722679 0 dispersed
Lcy10g1287 Lcy-Chr10:35722679 Lcy10g1291 Lcy-Chr10:35789184 0 dispersed
Lcy10g1286 Lcy-Chr10:35693674 Lcy10g1287 Lcy-Chr10:35722679 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65388 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1287 - - - 0.0