Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1291 ATGACACATCCAGCGGAGAAGCTCGTCCGGCTGATGATGCTTTTCTCAGCAGTTTTAGTAGCGGCAACGGCGGCATCACCAGACTGCGACCGACGATGTGGGAACCTGGAAATTCCATATCCGTTCGGAATGAAGGAAGGGTGTTATCTCAGTAACACTTTCTTAATTACCTGCAACAAAACTCATCATCATCCTCCAAAGGCATTTCTACAAGACAGCAACATTGAAGTCACCAATATATCCATCATCCACAGCGAGCTCCAGATCTTGCAGTCTGTAGCTCGAGATTGCTACAAACAAGATGGTTCTAATTTCTTTAACGATCGCATTATCAAAATTCCCATGTTCACCATTTCCCACACGAAGAACAAGTTCACCGTCATCGGCTGCGATACTTTCGCTTTAATTCAAGGCCAACTCCCGGGGGGATCATATAGAAGTGGGTGCATGACGCTGTGTGGAAACACTACTAGAACTATAACAGATGGATCTTGCTTCGGCAATGGATGCTGTCACTTGGAGATTCCCAAAGGCCTAAAACATTTGAGCTTGGAGGTTTTTAGCTTCGAAAATCACACTAAGGTTCTCAACTTCAATCCCTGTGGATATGCTTTTGTAATTCAACAAGACAACTTCACTTTCTCCTCCTCGTATCTTCACAATTTTACACGAGAGGAAGTTCCTCTGGTGCTTGATTGGGCCATCCCAACTGATCAAACTTGCTCAAAAGTTGACAACAAAACCAATTGCATATGTGGACCAAACAGTAAAAAGATCGACTTCCTCAGTGATAGATCTGAATATCGTTGCCAGTGCTTGGAAGGCTTTGAGGGTAATCCATATCTCTCTCGAGGTTGTCAAGACATAGATGAATGCGAGAATGGAAGTCATGAATGTAAATTCAAAGACGGGTGTGTTAACACACTAGGAAACTATACCTGCAACTGTCCTAAGAATTATAAAGGAGATAGCAGACGTGGGGGAGAAGGTTGCACCCAAAACTCCATGTCTTTCTTTCTTATCATCATCGGAATTGGCGTGGGTTTCACAATTTTAGTGATCGGTAGCATATGGTTATACTTGGGTTACAAAAAGTGGAAGTTTATCCAACAAAAGCAGATGTTTTTTCAGAAAAATGGAGGTTTGATGCTTCAACAACATCTTTCTCAATGGCAGTCACCTGCTGACATGCTTAGAATTTTCACTCGAGAAGAGTTAGAGAAGGCTACGAAAAACTATGATGAAAGCGTCGTGGTTGGCAAAGGTGGCTACGGTACAGTTTACAAAGGAATCTTAGATGACGGTTCGATAATCGCAATCAAGAAATCAAAATTGGTGGATCGATCTCAAACTAAACAATTCATCAACGAAGTCATCGTTCTCTCCCAAATCAATCATCGGAACGTGGTCAGGCTCCTTGGTTGTTGTTTGGAGACAAAAGTTCCATTATTAGTGTACGAATTCATCGCTAATGGCACGCTCTTCGAACACATCCATGACAAAACCAAGAATTCTTCTCTTTCCTGGGAAGCTCGATTAAAAATAGCTTCGGAAACTGCCGGTGTTCTCTCATACTTGCATTCTTCTGCTTCTACTCCCATTATCCACAGAGATATCAAGCCCACTAATATACTCTTAGACCATAATTTAACCGCCAAAGTCTCTGACTTCGGAGCTTCAAAGCTGGTTCCATTGGATGTTACTCAGATATCCACGATGGTGCAAGGGACTCTTGGATATTTGGACCCTGAATATTTGTTGACAAGTGAGTTGACAGAGAAAAGCGATGTATACAGCTTCGGAATTGTGCTCTTGGAGCTTCTAACTGGGAAGAAAGCGGTGAGTTTTGTGGGGGCAGAAGCTGAGAGGAATTTAGCCATGTACGTCTTGTGTGCTATGAAAGAAGATCGTCTTGAAGAAGTTGTGGAGAAGGAAATGATGACAGAAGCGAACTTTGAGCAGATAAAAGAAGTGGCAAGACTAGCAAAAACGTGTGTGAGCGTTAAAGGCGAGGAGCGGCCCACCATGAAGGAGGTGGCTATGGAGTTGGAGGGGCTTCGACTAATGCGGGCTGAGCATTCATGGGCTGAGAATAATGTGCTAGATGGGGCTTCAGACTCGAGTTCATTTGTTGTCAGTGACAATATGAACACTATGGATCATAGCATTAATGCACAGACTTCGTCTCATATCCCTCATGGAAGATGA 2208 43.16 MTHPAEKLVRLMMLFSAVLVAATAASPDCDRRCGNLEIPYPFGMKEGCYLSNTFLITCNKTHHHPPKAFLQDSNIEVTNISIIHSELQILQSVARDCYKQDGSNFFNDRIIKIPMFTISHTKNKFTVIGCDTFALIQGQLPGGSYRSGCMTLCGNTTRTITDGSCFGNGCCHLEIPKGLKHLSLEVFSFENHTKVLNFNPCGYAFVIQQDNFTFSSSYLHNFTREEVPLVLDWAIPTDQTCSKVDNKTNCICGPNSKKIDFLSDRSEYRCQCLEGFEGNPYLSRGCQDIDECENGSHECKFKDGCVNTLGNYTCNCPKNYKGDSRRGGEGCTQNSMSFFLIIIGIGVGFTILVIGSIWLYLGYKKWKFIQQKQMFFQKNGGLMLQQHLSQWQSPADMLRIFTREELEKATKNYDESVVVGKGGYGTVYKGILDDGSIIAIKKSKLVDRSQTKQFINEVIVLSQINHRNVVRLLGCCLETKVPLLVYEFIANGTLFEHIHDKTKNSSLSWEARLKIASETAGVLSYLHSSASTPIIHRDIKPTNILLDHNLTAKVSDFGASKLVPLDVTQISTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELLTGKKAVSFVGAEAERNLAMYVLCAMKEDRLEEVVEKEMMTEANFEQIKEVARLAKTCVSVKGEERPTMKEVAMELEGLRLMRAEHSWAENNVLDGASDSSSFVVSDNMNTMDHSINAQTSSHIPHGR 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35789184 35792189 + Maker00008381 Lcy10g1291 644802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1291 735 SUPERFAMILY EGF/Laminin 287 323 - -
Lcy10g1291 735 Gene3D Phosphorylase Kinase; domain 1 385 488 - -
Lcy10g1291 735 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524(InterPro)
Lcy10g1291 735 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Lcy10g1291 735 CDD EGF_CA 288 324 - -
Lcy10g1291 735 SMART serkin_6 413 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1291 735 FunFam Wall-associated receptor kinase 2 383 488 - -
Lcy10g1291 735 SUPERFAMILY Protein kinase-like (PK-like) 391 683 IPR011009 -
Lcy10g1291 735 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 698 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy10g1291 735 Pfam Protein kinase domain 414 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1291 735 SMART egfca_6 288 332 IPR001881 GO:0005509(InterPro)
Lcy10g1291 735 ProSitePatterns Calcium-binding EGF-like domain signature. 288 314 IPR018097 GO:0005509(InterPro)
Lcy10g1291 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1291 735 FunFam Fibrillin 2 283 327 - -
Lcy10g1291 735 Pfam Calcium-binding EGF domain 288 324 IPR049883 -
Lcy10g1291 735 CDD STKc_IRAK 419 686 - -
Lcy10g1291 735 ProSiteProfiles Protein kinase domain profile. 413 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1291 735 Gene3D Transferase(Phosphotransferase) domain 1 489 707 - -
Lcy10g1291 735 ProSiteProfiles EGF-like domain profile. 288 326 IPR000742 -
Lcy10g1291 735 FunFam Wall-associated receptor kinase 2 489 705 - -
Lcy10g1291 735 Pfam Wall-associated receptor kinase galacturonan-binding 29 89 IPR025287 GO:0030247(InterPro)
Lcy10g1291 735 Gene3D Laminin 234 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1283 Lcy-Chr10:35625683 Lcy10g1291 Lcy-Chr10:35789184 0 dispersed
Lcy10g1286 Lcy-Chr10:35693674 Lcy10g1291 Lcy-Chr10:35789184 0 dispersed
Lcy10g1287 Lcy-Chr10:35722679 Lcy10g1291 Lcy-Chr10:35789184 0 dispersed
Lcy10g1291 Lcy-Chr10:35789184 Lcy9g1023 Lcy-Chr9:33684062 8.52E-235 dispersed
Lcy10g1289 Lcy-Chr10:35754333 Lcy10g1291 Lcy-Chr10:35789184 3.70E-103 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65389 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1291 - - - 0.0