Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1297 ATGCACCTCCTGCTAAAGAATCTTCGTGGTGCGCACAGAGCTTCGTTTTCTCATTGCTCTCATCTGATAGACCAGTGCTTAGCCCTTAGATCTGTTCATATTGCGAAAACAATCCACGCTCAGTTGGTAAAGCTTGGCCTTAGCAGCAATACTTTTCTGGGTAATCGCTGTCTTCAGCTATACACGCTATTTGGTCCTGTCCATGACGTTTTGAGAGTATTTGATGACATCAAAGAGAAGAATATTGTATCTTGGAACATATGCTTGAAGGGTCTGTTTAGATTTGGCGACATCAGAGGTGCACGCCATCTGTTTGATGAAATGCCTCAGAGGGACATTGTTTCTTGGAACTCCATGATTTATGGTTGCGTTTCATCTGGATTTGTTGATAATGCCATGGACGTTTTTCTGGAAATGCAAAATGCTGGTTTTAGACCAAGTGAATATACCTTCTCCATTTTACTTTCACTTGTGTCGTGTGCTTGTCGTGGTAAGCAAATTCATGGCAGTATGATTCGAAGTGGAGTGGATCTGTCAAGTGTGGTGCTTGGGAATTCATTGATTGATATGTATGGAAAAGTTGGCCTTGTTGATTATATGTTTGCCATATTTTTAAGTATGGAAAAGGTGGATGTGATCTCTTGGAACTCTTTGATTTTGGGCTGCCACAGATCAGACTTTAGAGTATTGGCACTAAATCAGTTCTTTCTTATGAGAACCACTGAGCACTCTCCCGATCAGTTCACTGTATCAATAGTGATCAGTGTATGTGGTTGTCTCCACGAGTTGGAACTGGGTAAGCAAATTTTTGCTTTCTGTTTCAAGATGGGATTTACTTCTAACAGCATTGTACTTAGTGCTGCTATTGACTTGTTTTCCAAATGCAACAGCTTGATGGATGCAGTGCAGCTCTTTGAAGAAACCAATCAATGGGATCAAGCTCTTTGTCATGTCATGATTTCAAGCTTTGCATGGCATGGTCATTGGAGGGATTCTATGTGGCTTTTTGTGTATGCCTTAAGGGAGAACCTCAGGCCAACTGAGATTACACTCAGCAGTATGCTGAGCTCCATTTCTGTCTTCACACCTGTGGAGTTGGGCAGTCAAATTCATAATTTAGTTCTTAAATTGGGTTTTGAGTCTGATGCCATTGTCACTAGTTCGCTCGTTGACATGTATGCTAAAGTTGGATCAATTGATAATGCCATGAAGGTCTTTACAGATATGCCTGTAAGAGATTTAATAGCTTGGAACACTATGATTATGGGTCTGGTTAACAATGGTAAATACTTTGAGGCCCTACACACTTTTAAAAATTTGGTCAGGGAAGGTATGCTGGCAGATAGGATAACACTAGTTGGAGTCTTATTAGCTTGCAGCCATGCTGGTTTTGTTGATGAAGGGCTAGACATCTTCTCTACAATGGAAAATGAACACAGAGTCGTACCGTGGAACGAGCATTATACTTGCGTGGTGGACATGCTAAGTCGGGCTGGTAAATTTGAAGAAGCAGTTAACATTATCAAAACAACAACATGCCAACCTACTTCTACATTTTGGAAATCACTTCTTGATGCCTGTGCAATTCATGGAAACCTGAACGTCATTGAAAGAGTTGCAGAGAGGGTGATGAAGCTGGAACCGCAATCCTCCCTACCGTATTCGGTGCTGGCTCGAGCATATGCAATGAGAGGTCGATGGGAAAGCATGGTTCGTGTTAGGAAGGCCATGGAGAATATAGATGCACATAGGGTGAAGGCCTGCAGCTGGGTTGTGATAAAGGATTATGTGTATGCTTTTGAGGATGACCAATTACAGCATCTTCAGAGAGAGAATTTCTTTTGGGTGTTGGAGTTGATTATTTGGGAGGTGGAATATGGGAATGTCAATGAACAGTGTGATTAA 1905 41.68 MHLLLKNLRGAHRASFSHCSHLIDQCLALRSVHIAKTIHAQLVKLGLSSNTFLGNRCLQLYTLFGPVHDVLRVFDDIKEKNIVSWNICLKGLFRFGDIRGARHLFDEMPQRDIVSWNSMIYGCVSSGFVDNAMDVFLEMQNAGFRPSEYTFSILLSLVSCACRGKQIHGSMIRSGVDLSSVVLGNSLIDMYGKVGLVDYMFAIFLSMEKVDVISWNSLILGCHRSDFRVLALNQFFLMRTTEHSPDQFTVSIVISVCGCLHELELGKQIFAFCFKMGFTSNSIVLSAAIDLFSKCNSLMDAVQLFEETNQWDQALCHVMISSFAWHGHWRDSMWLFVYALRENLRPTEITLSSMLSSISVFTPVELGSQIHNLVLKLGFESDAIVTSSLVDMYAKVGSIDNAMKVFTDMPVRDLIAWNTMIMGLVNNGKYFEALHTFKNLVREGMLADRITLVGVLLACSHAGFVDEGLDIFSTMENEHRVVPWNEHYTCVVDMLSRAGKFEEAVNIIKTTTCQPTSTFWKSLLDACAIHGNLNVIERVAERVMKLEPQSSLPYSVLARAYAMRGRWESMVRVRKAMENIDAHRVKACSWVVIKDYVYAFEDDQLQHLQRENFFWVLELIIWEVEYGNVNEQCD 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35842953 35844857 + Maker00008625 Lcy10g1297 644808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1297 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Lcy10g1297 634 FunFam Pentatricopeptide repeat-containing protein At3g49710 24 164 - -
Lcy10g1297 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 111 IPR002885 -
Lcy10g1297 634 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 231 359 - -
Lcy10g1297 634 NCBIfam pentatricopeptide repeat 114 148 IPR002885 -
Lcy10g1297 634 NCBIfam pentatricopeptide repeat 416 448 IPR002885 -
Lcy10g1297 634 NCBIfam pentatricopeptide repeat 83 114 IPR002885 -
Lcy10g1297 634 FunFam Pentatricopeptide repeat-containing protein At2g34400 371 621 - -
Lcy10g1297 634 Pfam PPR repeat family 111 156 IPR002885 -
Lcy10g1297 634 Pfam PPR repeat 487 509 IPR002885 -
Lcy10g1297 634 Pfam PPR repeat 387 412 IPR002885 -
Lcy10g1297 634 Pfam PPR repeat 185 209 IPR002885 -
Lcy10g1297 634 Pfam PPR repeat 416 444 IPR002885 -
Lcy10g1297 634 Gene3D Tetratricopeptide repeat domain 16 159 IPR011990 GO:0005515(InterPro)
Lcy10g1297 634 Gene3D Tetratricopeptide repeat domain 160 261 IPR011990 GO:0005515(InterPro)
Lcy10g1297 634 Gene3D Tetratricopeptide repeat domain 262 361 IPR011990 GO:0005515(InterPro)
Lcy10g1297 634 Gene3D Tetratricopeptide repeat domain 364 463 IPR011990 GO:0005515(InterPro)
Lcy10g1297 634 SUPERFAMILY TPR-like 277 551 IPR011990 GO:0005515(InterPro)
Lcy10g1297 634 Gene3D Tetratricopeptide repeat domain 465 630 IPR011990 GO:0005515(InterPro)
Lcy10g1297 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1297 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1297 Lcy-Chr10:35842953 Lcy10g0030 Lcy-Chr10:450038 1.34E-91 dispersed
Lcy10g1296 Lcy-Chr10:35839095 Lcy10g1297 Lcy-Chr10:35842953 1.49E-67 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011857 1 2 0 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 1 29