Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1301 GGGAAGACGACCTGCACACCGGTGTGGTGCTTGCCACACCGCCTCCAATGCTTAAGTCAGAAAGCTGAAAGAGGAGAGCAAAAGAGCAAAGTGATTCAGACTTATCTAGGTGAAACCGGGGTGACCAGAGACACCAGGGATCGAACGGAGGGGAGGGAACTTGGCCCAGTGGTCGCCCTCGACCGAGCATGGGATTCTGCCAAGACGACCCAATCCCTTCAACTCGCTCTCCTTCGAGATCCGACCGCTACTTGGTCAAGCTTTAGTGTTGGTAGTGCGTTGTCCTGCTTAGTCCTTGGATTCTGGGGTGGTCCAGAATCACCCACAACCATAAATATATTAGAAAGCACCTCTGGTTGTTTCAACCCCGGCGTGGAGGAATTTCATTTATTCATCAGGAAGCGGTACGAGGTAAGGGGTTGTGGGAATTTGAGCATAATGGTTGGTAAAGAAAATTTGAGGACTGAAGGCTTGAACCTGTGCTTTGAGAAACTAATGATGCTTGCTGGTGGTGGTGATGGAATGGACTTTGGGGCTAAAGGAGTTAAAATGGACGGTGGGGTGATAGCCGGATGGAAGGACATTCCTATGGAGCTCCTCTTGCAGATTGTATCGCTTGTTGATGATCGAAGTGCTATTGTGGCTTCAGGAGTGTGTCGTGGATGGAGGGATGCTATTTGCTTTGGCCTTGGCCATCTCTCTCTCTCATGGTACTTTCTCTCATCTGCCTTGAACACCTTTCTTTTTATTTCGAATTTTGATCGTTTAACATCTGATGTAGATAAGCATATTGACTTTTGGTGTCAACTTTTTATCAGGTGCAAAAAGAACATGAACAACTTGGTCCTATCCCTTGCTCCTAAATTTGCAAAACTGCAAACTCTAATCTTGCGCCAGGATAAACCCCAGCTTGCAGATGATGCTGTTGAGACCATTGCTAGTTACTGCCATGATCTGCAGGTCCTGGACCTCAGCAAAAGTTTCAAGCTCAGTGATCTTTCCCTATATGCCCTGGCTCATGGTTGCCGTGATCTTAAAAAACTTAATATTAGTGGTTGTATTGCATTCAGTGACGCTGCACTGGCTTATCTGGCCAGTTATTGCAGAAAGCTAAAAGTTCTTAATCTTTGTGGCTGTGTCAAGGCTACATCTGACACTGCATTGCAGGCTATTGGACAATACTGTAATCATTTGCAGTCTGTAAATCTTGGCTGGTGTGAAAATGTGAGTGATGTGGGTGTGATGAGTTTGGCGTATGGATGTCCTGATCTTAGGAGCCTAGACTTGTGTGGCTGTGTCCTAATTACAGATGATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTACTGTCAGAACATAACAGACAGAGCAATGTATTCTTTGGCACATAGCTGCATCAAGAACAAGCCTACAAAATGGGGACCAGGGAAAGGCAAGAACGATGATGATGGACTTCGAACGCTTAACATCAGTCAATGCACTGCTCTTACTCCCCCTGCCGTCCAGGCTGTTTGTGATTCATTTCCTGCTCTCCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAATCCAAGCTCATCGCGCTCCAACTTCTTTTCTTCACCGGGCTCATTGA 1680 46.67 GKTTCTPVWCLPHRLQCLSQKAERGEQKSKVIQTYLGETGVTRDTRDRTEGRELGPVVALDRAWDSAKTTQSLQLALLRDPTATWSSFSVGSALSCLVLGFWGGPESPTTINILESTSGCFNPGVEEFHLFIRKRYEVRGCGNLSIMVGKENLRTEGLNLCFEKLMMLAGGGDGMDFGAKGVKMDGGVIAGWKDIPMELLLQIVSLVDDRSAIVASGVCRGWRDAICFGLGHLSLSWYFLSSALNTFLFISNFDRLTSDVDKHIDFWCQLFIRCKKNMNNLVLSLAPKFAKLQTLILRQDKPQLADDAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCIAFSDAALAYLASYCRKLKVLNLCGCVKATSDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGPGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAIQAHRAPTSFLHRAH 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35895776 35901758 + Maker00008529 Lcy10g1301 644812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1301 559 Gene3D - 190 228 - -
Lcy10g1301 559 PANTHER UNCHARACTERIZED 72 538 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Lcy10g1301 559 SUPERFAMILY F-box domain 189 227 IPR036047 GO:0005515(InterPro)
Lcy10g1301 559 Gene3D Ribonuclease Inhibitor 229 382 IPR032675 -
Lcy10g1301 559 Gene3D Ribonuclease Inhibitor 383 550 IPR032675 -
Lcy10g1301 559 SMART LRR_CC_2 316 341 IPR006553 -
Lcy10g1301 559 SMART LRR_CC_2 447 472 IPR006553 -
Lcy10g1301 559 SMART LRR_CC_2 368 394 IPR006553 -
Lcy10g1301 559 SMART LRR_CC_2 342 367 IPR006553 -
Lcy10g1301 559 SMART LRR_CC_2 395 420 IPR006553 -
Lcy10g1301 559 SMART LRR_CC_2 493 515 IPR006553 -
Lcy10g1301 559 SMART LRR_CC_2 289 315 IPR006553 -
Lcy10g1301 559 SMART LRR_CC_2 421 446 IPR006553 -
Lcy10g1301 559 CDD F-box_AtSKP2-like 191 237 - -
Lcy10g1301 559 Pfam Leucine Rich repeat 394 418 IPR001611 GO:0005515(InterPro)
Lcy10g1301 559 Pfam Leucine Rich repeat 421 444 IPR001611 GO:0005515(InterPro)
Lcy10g1301 559 SMART fbox_2 195 234 IPR001810 GO:0005515(InterPro)
Lcy10g1301 559 SUPERFAMILY RNI-like 266 473 - -
Lcy10g1301 559 Pfam F-box-like 192 226 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1301 K03875 - - csv:101220292 692.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1301 Lcy-Chr10:35895776 Lcy8g0321 Lcy-Chr8:9932857 5.39E-11 dispersed
Lcy10g1301 Lcy-Chr10:35895776 Lcy9g1014 Lcy-Chr9:33488957 1.97E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43